Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDN54_RS02665 Genome accession   NZ_CP107266
Coordinates   518206..518880 (+) Length   224 a.a.
NCBI ID   WP_260239863.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9112     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513206..523880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS02640 (NDN54_02640) cysT 513383..514212 (-) 830 Protein_512 sulfate ABC transporter permease subunit CysT -
  NDN54_RS02645 (NDN54_02645) - 514398..514730 (+) 333 WP_003687908.1 hypothetical protein -
  NDN54_RS02650 (NDN54_02650) - 515060..515569 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDN54_RS02655 (NDN54_02655) - 515801..516382 (-) 582 WP_003690895.1 superoxide dismutase -
  NDN54_RS02660 (NDN54_02660) dnaB 516546..517949 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDN54_RS12060 - 517943..518055 (-) 113 Protein_517 IS5/IS1182 family transposase -
  NDN54_RS02665 (NDN54_02665) pilH 518206..518880 (+) 675 WP_260239863.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDN54_RS02670 (NDN54_02670) pilV/pilI 518912..519526 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  NDN54_RS02675 (NDN54_02675) pilJ 519523..520482 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  NDN54_RS02680 (NDN54_02680) pilK 520461..521072 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN54_RS02685 (NDN54_02685) pilL 521074..521547 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDN54_RS02690 (NDN54_02690) - 521617..521925 (-) 309 WP_003706588.1 AzlD family protein -
  NDN54_RS02695 (NDN54_02695) - 521922..522633 (-) 712 Protein_524 AzlC family ABC transporter permease -
  NDN54_RS02700 (NDN54_02700) dut 522799..523251 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24974.42 Da        Isoelectric Point: 9.5621

>NTDB_id=642876 NDN54_RS02665 WP_260239863.1 518206..518880(+) (pilH) [Neisseria gonorrhoeae strain 9112]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFG
YLPDQNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 675 bp        

>NTDB_id=642876 NDN54_RS02665 WP_260239863.1 518206..518880(+) (pilH) [Neisseria gonorrhoeae strain 9112]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACAAGGC
ATATGACGGCGATGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCT
TCAATCATATCGCTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGC
TATTTGCCCGATCAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGC
GAGAGCAGTTTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTC
GTAAAAACGATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-208)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.196

100

0.942