Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   IHC90_RS02050 Genome accession   NZ_CP090493
Coordinates   421003..421599 (-) Length   198 a.a.
NCBI ID   WP_237035397.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-15-3942-7     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416003..426599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC90_RS02035 (IHC90_02035) - 417095..418108 (+) 1014 WP_065171762.1 Fe(3+) ABC transporter substrate-binding protein -
  IHC90_RS02040 (IHC90_02040) - 418265..419890 (+) 1626 WP_237035058.1 ABC transporter permease -
  IHC90_RS02045 (IHC90_02045) - 419893..420930 (+) 1038 WP_237035396.1 ABC transporter ATP-binding protein -
  IHC90_RS02050 (IHC90_02050) hapR 421003..421599 (-) 597 WP_237035397.1 TetR/AcrR family transcriptional regulator Regulator
  IHC90_RS02055 (IHC90_02055) hpt 421820..422356 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  IHC90_RS02060 (IHC90_02060) can 422431..423102 (-) 672 WP_005297646.1 carbonate dehydratase -
  IHC90_RS02065 (IHC90_02065) - 423201..424124 (+) 924 WP_176848874.1 ABC transporter ATP-binding protein -
  IHC90_RS02070 (IHC90_02070) - 424121..424891 (+) 771 WP_065171758.1 ABC transporter permease -
  IHC90_RS02075 (IHC90_02075) panC 425007..425897 (-) 891 WP_065171757.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22732.02 Da        Isoelectric Point: 7.1177

>NTDB_id=642865 IHC90_RS02050 WP_237035397.1 421003..421599(-) (hapR) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEIANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKGNLQKLTAVFEQGLTAGEFSRSQSA
ADLAHMFHGTCYVLYLQTHLTLDPEIMQRQADNYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=642865 IHC90_RS02050 WP_237035397.1 421003..421599(-) (hapR) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGTGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGAGGTCACGCAGATATCGCGGAAATAGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACCGCAAAAGCAAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCGCTATTTATCAAAACCA
ATAAAGGTAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGTCGCTCTCAATCTGCA
GCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATCAT
GCAGCGACAAGCTGATAACTATTTACAGAGCCTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485
  opaR Vibrio parahaemolyticus RIMD 2210633

52.514

90.404

0.475