Detailed information NTG0642862

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IHC90_RS01935
• Genome accession: NZ_CP090493
• Coordinates: 390128..391006 (-)
• Length: 292 a.a.
• NCBI ID: WP_237035050.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain AS-15-3942-7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 385128..396006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHC90_RS01910 (IHC90_01910)	secA	385180..387900 (+)	2721	WP_065170824.1	preprotein translocase subunit SecA	-
IHC90_RS01915 (IHC90_01915)	mutT	388001..388441 (-)	441	WP_086957272.1	8-oxo-dGTP diphosphatase MutT	-
IHC90_RS01920 (IHC90_01920)	yacG	388501..388710 (-)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
IHC90_RS01925 (IHC90_01925)	zapD	388719..389456 (-)	738	WP_237035048.1	cell division protein ZapD	-
IHC90_RS01930 (IHC90_01930)	coaE	389524..390126 (-)	603	WP_237035049.1	dephospho-CoA kinase	-
IHC90_RS01935 (IHC90_01935)	pilD	390128..391006 (-)	879	WP_237035050.1	prepilin peptidase	Machinery gene
IHC90_RS01940 (IHC90_01940)	pilC	391189..392415 (-)	1227	WP_237035051.1	type II secretion system F family protein	Machinery gene
IHC90_RS01945 (IHC90_01945)	pilB	392481..394172 (-)	1692	WP_237035052.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IHC90_RS01950 (IHC90_01950)	-	394182..394610 (-)	429	WP_065170818.1	pilin	-
IHC90_RS01960 (IHC90_01960)	ampD	395110..395688 (+)	579	WP_065171772.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32515.03 Da
• Isoelectric Point: 8.2918

>NTDB_id=642862 IHC90_RS01935 WP_237035050.1 390128..391006(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVALLFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=642862 IHC90_RS01935 WP_237035050.1 390128..391006(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCACGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATCCCTGTTATTAGTTGGCTGGTATTAAAGGGGAAGTGTAAATCTTGTCACGCACCGATTAGCCG
ACGTTACCCTATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTCGCGCTCCTATTTCCACCAACTTGGTGGGCGG
TTGCCGTCATCTTTTTCACTTTTGCCTTAATTGCTCTAACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCGATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGGTCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCTGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCTGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.753	100	0.658
pilD	Vibrio cholerae strain A1552	62.457	100	0.627
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	48.201	95.205	0.459