Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N5938_RS24285 Genome accession   NZ_CP107257
Coordinates   5171701..5172345 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5166701..5177345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS24265 (N5938_24265) - 5166966..5168911 (-) 1946 Protein_4815 tyrosine-type recombinase/integrase -
  N5938_RS24275 (N5938_24275) pgsA 5169280..5169840 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5938_RS24280 (N5938_24280) uvrC 5169874..5171700 (-) 1827 WP_116819924.1 excinuclease ABC subunit UvrC -
  N5938_RS24285 (N5938_24285) letA 5171701..5172345 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N5938_RS24290 (N5938_24290) pqsH 5172687..5173835 (-) 1149 Protein_4819 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  N5938_RS24295 (N5938_24295) - 5174453..5175481 (+) 1029 WP_019485641.1 AraC family transcriptional regulator -
  N5938_RS24300 (N5938_24300) - 5175497..5176711 (-) 1215 WP_003130955.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=642764 N5938_RS24285 WP_003090351.1 5171701..5172345(-) (letA) [Pseudomonas aeruginosa strain 2019CK-00034]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=642764 N5938_RS24285 WP_003090351.1 5171701..5172345(-) (letA) [Pseudomonas aeruginosa strain 2019CK-00034]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537