Detailed information NTG0642730

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LXM91_RS17015
• Genome accession: NZ_CP090477
• Coordinates: 3454422..3455585 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain W0101
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3449422..3460585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM91_RS16985 (LXM91_16985)	-	3449687..3450106 (-)	420	WP_025285352.1	TIGR03826 family flagellar region protein	-
LXM91_RS16990 (LXM91_16990)	comFC	3450180..3450869 (-)	690	WP_197061611.1	phosphoribosyltransferase family protein	Machinery gene
LXM91_RS16995 (LXM91_16995)	-	3450875..3451159 (-)	285	WP_039253645.1	competence protein ComFB	-
LXM91_RS17000 (LXM91_17000)	comFA	3451217..3452602 (-)	1386	WP_039253641.1	DEAD/DEAH box helicase	Machinery gene
LXM91_RS17005 (LXM91_17005)	-	3452710..3453558 (-)	849	WP_015418336.1	DegV family protein	-
LXM91_RS17010 (LXM91_17010)	degU	3453656..3454345 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LXM91_RS17015 (LXM91_17015)	degS	3454422..3455585 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
LXM91_RS17020 (LXM91_17020)	-	3455808..3456455 (+)	648	WP_003151384.1	YigZ family protein	-
LXM91_RS17025 (LXM91_17025)	-	3456460..3457716 (+)	1257	WP_039253637.1	LCP family protein	-
LXM91_RS17030 (LXM91_17030)	-	3457806..3458882 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
LXM91_RS17035 (LXM91_17035)	-	3459015..3460211 (-)	1197	WP_039253634.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=642730 LXM91_RS17015 WP_007407484.1 3454422..3455585(-) (degS) [Bacillus amyloliquefaciens strain W0101]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=642730 LXM91_RS17015 WP_007407484.1 3454422..3455585(-) (degS) [Bacillus amyloliquefaciens strain W0101]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951