Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LXM91_RS17010 Genome accession   NZ_CP090477
Coordinates   3453656..3454345 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain W0101     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448656..3459345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS16975 (LXM91_16975) - 3448854..3449336 (-) 483 WP_039253650.1 flagellar protein FlgN -
  LXM91_RS16980 (LXM91_16980) flgM 3449351..3449617 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXM91_RS16985 (LXM91_16985) - 3449687..3450106 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LXM91_RS16990 (LXM91_16990) comFC 3450180..3450869 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  LXM91_RS16995 (LXM91_16995) - 3450875..3451159 (-) 285 WP_039253645.1 competence protein ComFB -
  LXM91_RS17000 (LXM91_17000) comFA 3451217..3452602 (-) 1386 WP_039253641.1 DEAD/DEAH box helicase Machinery gene
  LXM91_RS17005 (LXM91_17005) - 3452710..3453558 (-) 849 WP_015418336.1 DegV family protein -
  LXM91_RS17010 (LXM91_17010) degU 3453656..3454345 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LXM91_RS17015 (LXM91_17015) degS 3454422..3455585 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LXM91_RS17020 (LXM91_17020) - 3455808..3456455 (+) 648 WP_003151384.1 YigZ family protein -
  LXM91_RS17025 (LXM91_17025) - 3456460..3457716 (+) 1257 WP_039253637.1 LCP family protein -
  LXM91_RS17030 (LXM91_17030) - 3457806..3458882 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=642729 LXM91_RS17010 WP_003219701.1 3453656..3454345(-) (degU) [Bacillus amyloliquefaciens strain W0101]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=642729 LXM91_RS17010 WP_003219701.1 3453656..3454345(-) (degU) [Bacillus amyloliquefaciens strain W0101]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1