Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LXM91_RS05650 Genome accession   NZ_CP090477
Coordinates   1082875..1083066 (+) Length   63 a.a.
NCBI ID   WP_007409124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077875..1088066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS05620 (LXM91_05620) argF 1078727..1079698 (+) 972 WP_039252015.1 ornithine carbamoyltransferase -
  LXM91_RS05625 (LXM91_05625) - 1079774..1079953 (+) 180 WP_003155070.1 YjzC family protein -
  LXM91_RS05630 (LXM91_05630) - 1079990..1080175 (-) 186 WP_003155069.1 YjzD family protein -
  LXM91_RS05635 (LXM91_05635) - 1080436..1081170 (+) 735 WP_015417203.1 hypothetical protein -
  LXM91_RS05640 (LXM91_05640) - 1081253..1081819 (+) 567 WP_015417204.1 NAD(P) binding enzyme -
  LXM91_RS05645 (LXM91_05645) med 1081909..1082862 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  LXM91_RS05650 (LXM91_05650) comZ 1082875..1083066 (+) 192 WP_007409124.1 ComZ family protein Regulator
  LXM91_RS05655 (LXM91_05655) - 1083095..1083313 (-) 219 WP_007409123.1 hypothetical protein -
  LXM91_RS05660 (LXM91_05660) - 1083481..1084419 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LXM91_RS05665 (LXM91_05665) fabF 1084442..1085680 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  LXM91_RS05670 (LXM91_05670) - 1085763..1086548 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LXM91_RS05675 (LXM91_05675) - 1086722..1087708 (+) 987 WP_012117279.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7185.30 Da        Isoelectric Point: 4.2259

>NTDB_id=642686 LXM91_RS05650 WP_007409124.1 1082875..1083066(+) (comZ) [Bacillus amyloliquefaciens strain W0101]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=642686 LXM91_RS05650 WP_007409124.1 1082875..1083066(+) (comZ) [Bacillus amyloliquefaciens strain W0101]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778