Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   N5898_RS08385 Genome accession   NZ_CP107256
Coordinates   1617253..1617636 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612253..1622636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS08365 (N5898_08365) - 1612332..1614266 (-) 1935 WP_070317452.1 RNB domain-containing ribonuclease -
  N5898_RS08370 (N5898_08370) ilvC 1614385..1615407 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N5898_RS08375 (N5898_08375) - 1615411..1616493 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  N5898_RS08380 (N5898_08380) dprA 1616483..1617256 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  N5898_RS08385 (N5898_08385) dprB 1617253..1617636 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  N5898_RS08390 (N5898_08390) - 1617665..1618504 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N5898_RS08395 (N5898_08395) msrA 1618680..1619177 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N5898_RS08400 (N5898_08400) ppa 1619218..1619736 (-) 519 WP_002855031.1 inorganic diphosphatase -
  N5898_RS08405 (N5898_08405) adk 1619746..1620324 (-) 579 WP_002855137.1 adenylate kinase -
  N5898_RS08410 (N5898_08410) aspS 1620321..1622072 (-) 1752 WP_002869354.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=642685 N5898_RS08385 WP_002858579.1 1617253..1617636(+) (dprB) [Campylobacter jejuni strain PNUSAC004956]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=642685 N5898_RS08385 WP_002858579.1 1617253..1617636(+) (dprB) [Campylobacter jejuni strain PNUSAC004956]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449