Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZ683_RS04520 Genome accession   NZ_CP090445
Coordinates   985762..986979 (-) Length   405 a.a.
NCBI ID   WP_182285740.1    Uniprot ID   -
Organism   Comamonas testosteroni strain X13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 980762..991979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ683_RS04490 (LZ683_04480) - 981570..982505 (+) 936 WP_275054800.1 ATP-binding protein -
  LZ683_RS04495 (LZ683_04485) - 982518..982988 (+) 471 WP_149354961.1 NUDIX domain-containing protein -
  LZ683_RS04500 (LZ683_04490) - 983105..983314 (-) 210 WP_034357520.1 DNA gyrase inhibitor YacG -
  LZ683_RS04505 (LZ683_04495) zapD 983414..984169 (-) 756 WP_275054024.1 cell division protein ZapD -
  LZ683_RS04510 (LZ683_04500) coaE 984257..984883 (-) 627 WP_182285738.1 dephospho-CoA kinase -
  LZ683_RS04515 (LZ683_04505) - 984887..985762 (-) 876 WP_256495879.1 A24 family peptidase -
  LZ683_RS04520 (LZ683_04510) pilC 985762..986979 (-) 1218 WP_182285740.1 type II secretion system F family protein Machinery gene
  LZ683_RS04525 (LZ683_04515) pilB 987004..988746 (-) 1743 WP_182285741.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZ683_RS04535 (LZ683_04525) - 989002..989931 (-) 930 WP_182285742.1 polyprenyl synthetase family protein -
  LZ683_RS04540 (LZ683_04530) rplU 990288..990599 (+) 312 WP_003058536.1 50S ribosomal protein L21 -
  LZ683_RS04545 (LZ683_04535) rpmA 990616..990873 (+) 258 WP_003058534.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44517.27 Da        Isoelectric Point: 9.6093

>NTDB_id=642490 LZ683_RS04520 WP_182285740.1 985762..986979(-) (pilC) [Comamonas testosteroni strain X13]
MASAASKGIKEFLFEWEGKDRNGKIVRGETRAGGENQIQAMLRRQGVTPSKIKKRKTRGGKKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLYFNSLYCNLVEAGEAAGILESLLDRLATYMEKT
EAIKSKIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYWWLIFGVLGGGIYFFM
QAWKRNERVQQFMDRTMLKLPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYLYRNATDRIQSEVSTGT
SLTVAMANANIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=642490 LZ683_RS04520 WP_182285740.1 985762..986979(-) (pilC) [Comamonas testosteroni strain X13]
ATGGCAAGCGCAGCGTCCAAGGGAATCAAGGAATTTCTCTTCGAGTGGGAAGGCAAGGATCGCAACGGCAAGATCGTTCG
CGGCGAGACTCGTGCCGGCGGAGAAAACCAGATCCAGGCCATGCTGCGCCGCCAGGGTGTGACGCCGTCCAAGATCAAGA
AGCGCAAGACCCGCGGCGGCAAGAAGATCAAGCCCAAGGACATTGCACTGTTCACGCGCCAGCTGGCCACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCTTTCGACATCGTGGGCCGTGGCAACACCAATCCCAACGTCACCAAGCTGCTCAACGA
CATCCGCTCCGATGTGGAAACCGGCACCTCGCTGAGCGCCGCCTTTCGCAAGTTTCCGCTCTATTTCAACAGCCTCTACT
GCAACTTGGTGGAGGCCGGCGAGGCCGCCGGTATTCTGGAATCGCTGCTGGACCGTCTTGCCACCTACATGGAAAAGACG
GAAGCCATCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCCACCTCGGTCATGATCGTGGCTTTCGTCGTGGTGACCGT
GATCATGATCTTCGTGATTCCGGCCTTCAAGGAGGTCTTCACCTCCTTTGGCGCCGACCTGCCCGCGCCCACGCTGCTGG
TGATGGGCATCAGCGATTACTTTGTCCAGTACTGGTGGCTGATCTTTGGCGTGCTGGGCGGCGGCATCTATTTCTTCATG
CAAGCCTGGAAGCGCAACGAGCGCGTGCAGCAGTTCATGGACCGCACCATGCTCAAGCTACCCGTCTTCGGCGTGCTGAT
CGAGAAGTCCTGCGTGGCCCGCTGGACACGTACGCTGTCCACCATGTTTGCCGCCGGCGTGCCGCTGGTCGAGGCGCTGG
ACTCCGTGGGCGGCGCCTCGGGCAACTACCTCTACAGAAACGCCACCGACAGGATTCAGTCGGAAGTCTCCACGGGCACC
AGCCTGACCGTGGCCATGGCCAATGCCAATATCTTCCCTTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCGGG
CGCCATCGACCATATGCTGGGCAAGGCCGCCGACTTCTATGAAAGCGAAGTGGACGAAATGGTGGCGGGTCTTTCCAGCC
TGATGGAGCCCATCATCATCGTCTTCCTGGGTACCTTGATCGGCGGCATCGTGGTGTCCATGTATCTGCCTATCTTCAAG
CTGGGTCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilG Neisseria gonorrhoeae MS11

51.889

98.025

0.509
  pilC Legionella pneumophila strain ERS1305867

51.768

97.778

0.506
  pilG Neisseria meningitidis 44/76-A

51.637

98.025

0.506
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

37.811

99.259

0.375
  pilC Thermus thermophilus HB27

36.881

99.753

0.368