Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LY387_RS14165 Genome accession   NZ_CP090438
Coordinates   3120382..3121002 (+) Length   206 a.a.
NCBI ID   WP_042475876.1    Uniprot ID   A0A090SPK7
Organism   Vibrio maritimus strain BH16     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115382..3126002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS14145 - 3115600..3116520 (-) 921 WP_234494565.1 ABC transporter ATP-binding protein -
  LY387_RS14150 - 3116708..3118354 (-) 1647 WP_234494566.1 SulP family inorganic anion transporter -
  LY387_RS14155 can 3118589..3119248 (+) 660 WP_234494567.1 carbonate dehydratase -
  LY387_RS14160 hpt 3119327..3119857 (-) 531 WP_042475879.1 hypoxanthine phosphoribosyltransferase -
  LY387_RS14165 opaR 3120382..3121002 (+) 621 WP_042475876.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LY387_RS14170 lpdA 3121079..3122506 (-) 1428 WP_042475873.1 dihydrolipoyl dehydrogenase -
  LY387_RS14175 aceF 3122785..3124695 (-) 1911 WP_234494568.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23596.85 Da        Isoelectric Point: 5.5347

>NTDB_id=642449 LY387_RS14165 WP_042475876.1 3120382..3121002(+) (opaR) [Vibrio maritimus strain BH16]
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVNIKDNLTNILDSVVDMVIEDCHWNKVWFEWSTSTRDEVWPLFVSSNKTSQALVENMFIRAIERGEVCPHHNPK
HLTSLFHGLCYSLFVEAMRNNDSDAVKSLTDCYMDMVCIYNNGDAH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=642449 LY387_RS14165 WP_042475876.1 3120382..3121002(+) (opaR) [Vibrio maritimus strain BH16]
ATGGACTCAATCGTAAAAAGACCTAGGACACGCCTGTCTCCGCAAAAGCGAAAGCTTCAGCTCATGGAGATAGCACTAGA
AGTATTTGCAAAGCGCGGTATTGGCCGCGGCGGACACGCAGACATCGCAGAGATAGCGCAGGTATCTGTCGCTACAGTGT
TTAACTACTTCCCTACTCGTGAAGACTTGGTGGACGAAGTACTTAATCACGTCGTTTGTCAATATTCCAACTTCCTCTCG
AATACCATCGATCTCGATGTCAATATCAAGGACAACCTGACGAATATCCTAGATAGCGTCGTCGATATGGTGATCGAGGA
TTGTCACTGGAATAAAGTGTGGTTTGAATGGAGCACGTCTACTCGCGATGAGGTATGGCCGCTGTTTGTAAGCTCAAACA
AGACTAGCCAAGCTCTAGTAGAAAATATGTTTATCAGAGCTATCGAACGTGGTGAAGTCTGCCCGCATCATAACCCTAAA
CACCTAACAAGCTTGTTCCACGGTCTTTGCTATTCGCTCTTCGTAGAAGCGATGCGCAATAATGATAGCGATGCGGTGAA
ATCATTGACGGATTGCTACATGGATATGGTGTGCATATATAACAATGGCGACGCTCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090SPK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

72.637

97.573

0.709
  hapR Vibrio cholerae C6706

68.5

97.087

0.665
  hapR Vibrio cholerae strain A1552

68.5

97.087

0.665