Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LY387_RS04680 Genome accession   NZ_CP090438
Coordinates   1008049..1009443 (+) Length   464 a.a.
NCBI ID   WP_234495474.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003049..1014443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS04660 rsxB 1003943..1004524 (-) 582 WP_128648622.1 electron transport complex subunit RsxB -
  LY387_RS04665 rsxA 1004524..1005105 (-) 582 WP_042476631.1 electron transport complex subunit RsxA -
  LY387_RS04675 uvrB 1005885..1007915 (+) 2031 WP_234495473.1 excinuclease ABC subunit UvrB -
  LY387_RS04680 luxO 1008049..1009443 (+) 1395 WP_234495474.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LY387_RS04685 - 1009440..1009790 (+) 351 WP_234495475.1 Hpt domain-containing protein -
  LY387_RS04690 - 1009835..1010722 (-) 888 WP_234495476.1 YvcK family protein -
  LY387_RS04695 moaA 1011031..1012020 (+) 990 WP_234495477.1 GTP 3',8-cyclase MoaA -
  LY387_RS04700 moaB 1012068..1012580 (+) 513 WP_042476651.1 molybdenum cofactor biosynthesis protein B -
  LY387_RS04705 moaC 1012596..1013075 (+) 480 WP_128648620.1 cyclic pyranopterin monophosphate synthase MoaC -
  LY387_RS04710 moaD 1013072..1013317 (+) 246 WP_234495478.1 molybdopterin synthase sulfur carrier subunit -
  LY387_RS04715 moaE 1013319..1013774 (+) 456 WP_234495479.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51639.07 Da        Isoelectric Point: 5.2369

>NTDB_id=642436 LY387_RS04680 WP_234495474.1 1008049..1009443(+) (luxO) [Vibrio maritimus strain BH16]
MQPLIDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLEHRTPDLILLDLRLPDMTGMDVLDAVKKFN
PDVPIIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRDEINDTGSPSYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRD
REEDVIEIAYSLLGFMSHEEGKSFVRFSQDVIERFIQYEWPGNVRQLQNVLRNVVVLNHGKEITLDMLPPPLNIPVVVSK
PAATITSSFGPQDIQPLWQTERRTIEQAIEACDGNIPQAAKYLDVSPSTIYRKIQAWNASENKV

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=642436 LY387_RS04680 WP_234495474.1 1008049..1009443(+) (luxO) [Vibrio maritimus strain BH16]
ATGCAACCTTTAATCGACGAGCCGAAGTCTCGCTACCTATTGATGGTAGAAGATACTGCCTCCGTTGCTGCGTTGTATCG
CTCGTACCTTTCTCCTTTGGGGATCGATATCAATATCGTTGGCAATGGCCGCGACGCGATTCAAAGCTTAGAGCATCGGA
CGCCTGATCTAATACTTCTCGACCTGCGTCTTCCCGACATGACAGGTATGGATGTGTTGGACGCAGTAAAAAAATTCAAT
CCCGATGTGCCGATCATCTTTATGACGGCGCACGGTTCTATCGACATTGCGGTAGACGCGATGCAACACGGGGCGCAAGA
CTTCTTGATCAAACCCTGTGAGGCAGACCGTCTGCGCGTCACGGTCACCAACGCCATCCGCAAAGCCTCTAAGCTGCGTG
ATGAGATCAATGATACCGGCAGCCCGAGTTATCAAGGTTTCATCGGCAGTAGTCAGCCAATGCAAGCCGTATACCGTACC
ATCGACTCTGCCGCATCCAGTAAAGCCAGTATTTTTATCACAGGCGAAAGTGGTACCGGTAAAGAGGTATGCGCAGAAGC
CATTCACGCAGCGAGTAAGCGTGGTGATAAGCCGTTCATCGCCATTAACTGTGCTGCAATTCCTAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGCGCTTTTACCGGCGCGGCGGTAGACAGACAAGGTGCGGCAGAGCTCGCCGATGGA
GGAACGTTATTCCTCGATGAGCTGTGTGAGATGGATCTTGACCTACAAACCAAGTTATTGCGATTTATCCAAACAGGTAC
ATTCCAGAAGGTTGGTTCTTCTCGAATGAAGAAAGTGGATGTGCGCTTCGTGTGTGCAACCAACCGAGATCCCTGGAAAG
AGGTACAAGAAGGGCGCTTTAGGGAAGATTTGTACTATCGCTTGTACGTTATCCCACTTCACTTGCCACCACTTCGAGAC
CGTGAAGAGGACGTAATTGAGATTGCCTATTCGCTGTTGGGTTTTATGTCCCATGAAGAAGGCAAAAGTTTCGTACGTTT
TTCGCAGGATGTGATAGAGCGATTTATTCAATATGAATGGCCGGGTAACGTACGTCAGTTGCAGAATGTGCTTCGAAATG
TGGTCGTGCTGAACCATGGCAAGGAAATTACCTTGGACATGTTACCTCCACCATTGAATATACCTGTCGTCGTAAGTAAG
CCCGCAGCTACTATTACGTCGTCGTTTGGTCCTCAGGATATACAGCCGTTGTGGCAAACTGAGCGCCGTACCATCGAGCA
GGCGATTGAAGCGTGTGATGGGAATATTCCTCAAGCTGCTAAGTACTTAGATGTTAGTCCATCGACTATCTATAGAAAAA
TCCAAGCATGGAATGCGAGTGAGAATAAAGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.445

96.336

0.804
  pilR Pseudomonas aeruginosa PAK

37.978

95.905

0.364