Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LZP98_RS06765 Genome accession   NZ_CP090428
Coordinates   1434181..1434615 (-) Length   144 a.a.
NCBI ID   WP_014668227.1    Uniprot ID   -
Organism   Pasteurella multocida strain SD001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429181..1439615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP98_RS06735 (LZP98_06735) - 1429745..1430014 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  LZP98_RS06740 (LZP98_06740) yacG 1430014..1430217 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  LZP98_RS06745 (LZP98_06745) coaE 1430228..1430848 (-) 621 WP_005751078.1 dephospho-CoA kinase -
  LZP98_RS06750 (LZP98_06750) - 1430863..1431585 (-) 723 WP_016534448.1 prepilin peptidase -
  LZP98_RS06755 (LZP98_06755) - 1431585..1432796 (-) 1212 WP_014668225.1 type II secretion system F family protein -
  LZP98_RS06760 (LZP98_06760) pilB 1432796..1434181 (-) 1386 WP_014668226.1 GspE/PulE family protein Machinery gene
  LZP98_RS06765 (LZP98_06765) pilA 1434181..1434615 (-) 435 WP_014668227.1 prepilin peptidase-dependent pilin Machinery gene
  LZP98_RS06770 (LZP98_06770) ampD 1434776..1435342 (+) 567 WP_014668228.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LZP98_RS06775 (LZP98_06775) rppH 1435928..1436395 (+) 468 Protein_1305 RNA pyrophosphohydrolase -
  LZP98_RS06780 (LZP98_06780) - 1436527..1437321 (+) 795 WP_005719128.1 sulfite exporter TauE/SafE family protein -
  LZP98_RS06785 (LZP98_06785) lgt 1437331..1438134 (+) 804 WP_014668230.1 prolipoprotein diacylglyceryl transferase -
  LZP98_RS06790 (LZP98_06790) - 1438140..1438991 (+) 852 WP_014668231.1 thymidylate synthase -
  LZP98_RS06795 (LZP98_06795) tadA 1439018..1439506 (+) 489 WP_014668232.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15084.52 Da        Isoelectric Point: 9.1281

>NTDB_id=642307 LZP98_RS06765 WP_014668227.1 1434181..1434615(-) (pilA) [Pasteurella multocida strain SD001]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR
ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTPSGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=642307 LZP98_RS06765 WP_014668227.1 1434181..1434615(-) (pilA) [Pasteurella multocida strain SD001]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT
GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG
CTTGGAAGGAATTAGCTATACGCTGACACCGAGTGGTAACGCTGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC
AATCTGACATTTTCCCAGCAGGATTTTGTGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Pilin (bacterial filament) (Pilin)

(42-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.5

100

0.625
  pilA Haemophilus influenzae Rd KW20

60.417

100

0.604
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  pilA/pilA1 Eikenella corrodens VA1

38.129

96.528

0.368