Detailed information NTG0064226

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: U722_RS16480
• Genome accession: NC_023073
• Coordinates: 3432732..3433895 (-)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens LFB112
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3427732..3438895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U722_RS16450 (U722_17485)	-	3427997..3428416 (-)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-
U722_RS16455 (U722_17490)	comFC	3428490..3429179 (-)	690	WP_196616643.1	phosphoribosyltransferase family protein	Machinery gene
U722_RS16460 (U722_17495)	-	3429185..3429469 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
U722_RS16465 (U722_17500)	comFA	3429527..3430912 (-)	1386	WP_024085865.1	DEAD/DEAH box helicase	Machinery gene
U722_RS16470 (U722_17505)	-	3431020..3431868 (-)	849	WP_024085866.1	DegV family protein	-
U722_RS16475	degU	3431966..3432655 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
U722_RS16480 (U722_17515)	degS	3432732..3433895 (-)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
U722_RS16485 (U722_17520)	-	3434118..3434765 (+)	648	WP_003151384.1	YigZ family protein	-
U722_RS16490 (U722_17525)	-	3434770..3435984 (+)	1215	WP_024085868.1	LCP family protein	-
U722_RS16495 (U722_17530)	-	3436074..3437150 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
U722_RS16500 (U722_17535)	tuaH	3437283..3438479 (-)	1197	WP_024085869.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=64226 U722_RS16480 WP_003151385.1 3432732..3433895(-) (degS) [Bacillus amyloliquefaciens LFB112]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=64226 U722_RS16480 WP_003151385.1 3432732..3433895(-) (degS) [Bacillus amyloliquefaciens LFB112]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTGAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCTACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948