Detailed information NTG0064226

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HRR23_RS04955
• Genome accession: NZ_AP021894
• Coordinates: 1037620..1038612 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-10-1CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1032620..1043612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRR23_RS04925 (VEGS09_09810)	ispD	1032681..1033391 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HRR23_RS04930 (VEGS09_09820)	ispF	1033391..1033870 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HRR23_RS04935 (VEGS09_09830)	truD	1033867..1034916 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HRR23_RS04940 (VEGS09_09840)	surE	1034897..1035658 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HRR23_RS04945 (VEGS09_09850)	pcm	1035652..1036278 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HRR23_RS04950 (VEGS09_09860)	nlpD	1036463..1037557 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HRR23_RS04955 (VEGS09_09870)	rpoS	1037620..1038612 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HRR23_RS04960 (VEGS09_09880)	ygbN	1038706..1040070 (-)	1365	WP_000104429.1	GntP family transporter	-
HRR23_RS04965 (VEGS09_09890)	ygbM	1040159..1040935 (-)	777	WP_063614838.1	HPr family phosphocarrier protein	-
HRR23_RS04970 (VEGS09_09900)	ygbL	1040940..1041578 (-)	639	WP_001278994.1	aldolase	-
HRR23_RS04975 (VEGS09_09920)	otnK	1041575..1042836 (-)	1262	Protein_993	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64226 HRR23_RS04955 WP_000081550.1 1037620..1038612(+) (rpoS) [Escherichia coli strain 2018-10-1CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64226 HRR23_RS04955 WP_000081550.1 1037620..1038612(+) (rpoS) [Escherichia coli strain 2018-10-1CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715