Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U722_RS14550 Genome accession   NC_023073
Coordinates   3048483..3049127 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens LFB112     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3043483..3054127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS14515 (U722_15465) - 3044668..3045099 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  U722_RS14520 (U722_15470) - 3045099..3045440 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  U722_RS14525 (U722_15475) - 3045433..3046914 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  U722_RS14530 (U722_15480) - 3046920..3047396 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  U722_RS14535 (U722_15485) - 3047396..3047680 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  U722_RS14540 (U722_15490) mnhG 3047664..3048038 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  U722_RS14545 (U722_15495) - 3048078..3048461 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  U722_RS14550 (U722_15500) comA 3048483..3049127 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  U722_RS14555 (U722_15505) comP 3049211..3051502 (-) 2292 WP_014305719.1 histidine kinase Regulator
  U722_RS14560 (U722_15510) comX 3051514..3051678 (-) 165 WP_007613432.1 competence pheromone ComX -
  U722_RS14565 (U722_15515) - 3051678..3052589 (-) 912 WP_014305720.1 polyprenyl synthetase family protein -
  U722_RS14570 (U722_15520) degQ 3052741..3052881 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  U722_RS14575 (U722_15530) - 3053347..3053688 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=64218 U722_RS14550 WP_003152052.1 3048483..3049127(-) (comA) [Bacillus amyloliquefaciens LFB112]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=64218 U722_RS14550 WP_003152052.1 3048483..3049127(-) (comA) [Bacillus amyloliquefaciens LFB112]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment