Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M497_RS00040 Genome accession   NZ_CP090409
Coordinates   9220..9738 (+) Length   172 a.a.
NCBI ID   WP_003648134.1    Uniprot ID   A0A133PDF0
Organism   Lactobacillus gasseri 2016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4220..14738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M497_RS00025 (M497_00025) gyrB 4236..6203 (+) 1968 WP_003648137.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M497_RS00030 (M497_00030) gyrA 6214..8703 (+) 2490 WP_021314945.1 DNA gyrase subunit A -
  M497_RS00035 (M497_00035) rpsF 8890..9186 (+) 297 WP_003648136.1 30S ribosomal protein S6 -
  M497_RS00040 (M497_00040) ssb 9220..9738 (+) 519 WP_003648134.1 single-stranded DNA-binding protein Machinery gene
  M497_RS00045 (M497_00045) rpsR 9763..9996 (+) 234 WP_003648133.1 30S ribosomal protein S18 -
  M497_RS00050 (M497_00050) - 10091..11008 (+) 918 WP_021314946.1 magnesium transporter CorA family protein -
  M497_RS00055 (M497_00055) - 11114..13132 (+) 2019 WP_003648132.1 DHH family phosphoesterase -
  M497_RS00060 (M497_00060) rplI 13144..13599 (+) 456 WP_003651632.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18499.16 Da        Isoelectric Point: 4.7531

>NTDB_id=642140 M497_RS00040 WP_003648134.1 9220..9738(+) (ssb) [Lactobacillus gasseri 2016]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=642140 M497_RS00040 WP_003648134.1 9220..9738(+) (ssb) [Lactobacillus gasseri 2016]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCTGCAGAGAATTTTGCTAACTTTACTTCCAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTACTAGAATCACGTCG
CGACCGTGAAAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACTATTGATATCTCGGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PDF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.494

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.432

100

0.506