Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LZ183_RS08685 Genome accession   NZ_CP090407
Coordinates   1789785..1790471 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA159-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784785..1795471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ183_RS08665 (LZ183_08645) rpsT 1785675..1785950 (+) 276 WP_113587807.1 30S ribosomal protein S20 -
  LZ183_RS08670 (LZ183_08650) holA 1785995..1786969 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LZ183_RS08675 (LZ183_08655) comEC 1787026..1789227 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LZ183_RS08680 (LZ183_08660) - 1789232..1789693 (-) 462 WP_000439690.1 ComE operon protein 2 -
  LZ183_RS08685 (LZ183_08665) comEA 1789785..1790471 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  LZ183_RS08690 (LZ183_08670) - 1790511..1791227 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  LZ183_RS08695 (LZ183_08675) rsfS 1791230..1791583 (-) 354 WP_001088020.1 ribosome silencing factor -
  LZ183_RS08700 (LZ183_08680) yqeK 1791584..1792168 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LZ183_RS08705 (LZ183_08685) nadD 1792158..1792727 (-) 570 WP_113587805.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LZ183_RS08710 (LZ183_08690) yhbY 1792730..1793020 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  LZ183_RS08715 (LZ183_08695) aroE 1793024..1793830 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  LZ183_RS08720 (LZ183_08700) yqeH 1793844..1794944 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=642124 LZ183_RS08685 WP_001825349.1 1789785..1790471(-) (comEA) [Staphylococcus aureus strain GD4SA159-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=642124 LZ183_RS08685 WP_001825349.1 1789785..1790471(-) (comEA) [Staphylococcus aureus strain GD4SA159-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961