Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   LY388_RS16840 Genome accession   NZ_CP090387
Coordinates   2544572..2545183 (+) Length   203 a.a.
NCBI ID   WP_000340100.1    Uniprot ID   Q4F6W7
Organism   Vibrio cholerae strain GXFL1-4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539572..2550183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS16820 (LY388_16820) - 2539908..2540825 (-) 918 WP_000271070.1 ABC transporter ATP-binding protein -
  LY388_RS16825 (LY388_16825) - 2541206..2542852 (-) 1647 WP_000484915.1 SulP family inorganic anion transporter -
  LY388_RS16830 (LY388_16830) can 2543000..2543668 (+) 669 WP_001114117.1 carbonate dehydratase -
  LY388_RS16835 (LY388_16835) hpt 2543743..2544276 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  LY388_RS16840 (LY388_16840) hapR 2544572..2545183 (+) 612 WP_000340100.1 quorum-sensing master transcriptional regulator HapR Regulator
  LY388_RS16845 (LY388_16845) rsmI 2545393..2546259 (-) 867 WP_000131547.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LY388_RS16850 (LY388_16850) - 2546329..2548134 (+) 1806 WP_199358496.1 penicillin-binding protein activator -
  LY388_RS16855 (LY388_16855) - 2548121..2548489 (+) 369 WP_407084137.1 YraN family protein -
  LY388_RS16860 (LY388_16860) - 2548493..2549083 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  LY388_RS16865 (LY388_16865) - 2549086..2549655 (+) 570 WP_000836325.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23720.44 Da        Isoelectric Point: 6.6356

>NTDB_id=641935 LY388_RS16840 WP_000340100.1 2544572..2545183(+) (hapR) [Vibrio cholerae strain GXFL1-4]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=641935 LY388_RS16840 WP_000340100.1 2544572..2545183(+) (hapR) [Vibrio cholerae strain GXFL1-4]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAATTTTTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAACGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGTCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4F6W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.507

100

0.995
  hapR Vibrio cholerae strain A1552

99.507

100

0.995
  opaR Vibrio parahaemolyticus RIMD 2210633

72.727

97.537

0.709