Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LY388_RS14465 Genome accession   NZ_CP090387
Coordinates   2002165..2003532 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain GXFL1-4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997165..2008532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS14430 (LY388_14430) moaE 1997878..1998339 (-) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -
  LY388_RS14435 (LY388_14435) moaD 1998341..1998586 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  LY388_RS14440 (LY388_14440) moaC 1998583..1999062 (-) 480 WP_000080907.1 cyclic pyranopterin monophosphate synthase MoaC -
  LY388_RS14445 (LY388_14445) moaB 1999073..1999585 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  LY388_RS14450 (LY388_14450) moaA 1999645..2000634 (-) 990 WP_000068568.1 GTP 3',8-cyclase MoaA -
  LY388_RS14455 (LY388_14455) - 2000941..2001831 (+) 891 WP_000061070.1 YvcK family protein -
  LY388_RS14460 (LY388_14460) luxU 2001820..2002161 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  LY388_RS14465 (LY388_14465) luxO 2002165..2003532 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LY388_RS14470 (LY388_14470) uvrB 2003962..2005992 (-) 2031 WP_199358268.1 excinuclease ABC subunit UvrB -
  LY388_RS14480 (LY388_14480) rsxA 2006874..2007455 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  LY388_RS14485 (LY388_14485) rsxB 2007455..2008042 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=641931 LY388_RS14465 WP_001888250.1 2002165..2003532(-) (luxO) [Vibrio cholerae strain GXFL1-4]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=641931 LY388_RS14465 WP_001888250.1 2002165..2003532(-) (luxO) [Vibrio cholerae strain GXFL1-4]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCTAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACACTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCACCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAACGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAGCAAGCCATCGAAGCGTGTGATGGTAACATTCCTCGCGCCGC
GACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38