Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LY388_RS06790 Genome accession   NZ_CP090387
Coordinates   279120..279638 (+) Length   172 a.a.
NCBI ID   WP_000792033.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274120..284638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS06770 (LY388_06770) - 274337..276814 (-) 2478 WP_032470274.1 penicillin-binding protein 1A -
  LY388_RS06775 (LY388_06775) pilM 276957..277973 (+) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  LY388_RS06780 (LY388_06780) pilN 277963..278547 (+) 585 WP_185840471.1 PilN domain-containing protein Machinery gene
  LY388_RS06785 (LY388_06785) pilO 278540..279130 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  LY388_RS06790 (LY388_06790) pilP 279120..279638 (+) 519 WP_000792033.1 pilus assembly protein PilP Machinery gene
  LY388_RS06795 (LY388_06795) pilQ 279664..281379 (+) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  LY388_RS06800 (LY388_06800) aroK 281566..282090 (+) 525 WP_000818616.1 shikimate kinase AroK -
  LY388_RS06805 (LY388_06805) aroB 282118..283203 (+) 1086 WP_162810142.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.22 Da        Isoelectric Point: 10.0857

>NTDB_id=641914 LY388_RS06790 WP_000792033.1 279120..279638(+) (pilP) [Vibrio cholerae strain GXFL1-4]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=641914 LY388_RS06790 WP_000792033.1 279120..279638(+) (pilP) [Vibrio cholerae strain GXFL1-4]
ATGAAAAATAAACCGCTTGGATTATGGCTGATGAGTTTGTTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.977

100

0.57