Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LZG54_RS12645 Genome accession   NZ_CP090382
Coordinates   2631154..2632587 (+) Length   477 a.a.
NCBI ID   WP_234114137.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2626154..2637587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS12625 (LZG54_12640) thrC 2626288..2627427 (+) 1140 WP_004975706.1 threonine synthase -
  LZG54_RS12630 (LZG54_12645) - 2627542..2628630 (-) 1089 WP_234114135.1 serine hydrolase -
  LZG54_RS12635 (LZG54_12650) - 2628846..2629481 (+) 636 WP_178318309.1 response regulator -
  LZG54_RS12640 (LZG54_12655) pilS 2629522..2631084 (+) 1563 WP_234114136.1 sensor histidine kinase Regulator
  LZG54_RS12645 (LZG54_12660) pilR 2631154..2632587 (+) 1434 WP_234114137.1 sigma-54-dependent transcriptional regulator Regulator
  LZG54_RS12650 (LZG54_12665) - 2632637..2633800 (-) 1164 WP_234114138.1 S41 family peptidase -
  LZG54_RS12655 (LZG54_12670) gpmI 2633825..2635372 (-) 1548 WP_004975686.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LZG54_RS12660 (LZG54_12675) lptG 2635516..2636586 (-) 1071 WP_234114139.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53743.61 Da        Isoelectric Point: 5.7300

>NTDB_id=641893 LZG54_RS12645 WP_234114137.1 2631154..2632587(+) (pilR) [Acinetobacter towneri strain SCLZS30]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLVQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDDDVIDLKHLQTAPLRQFSISNTAITES
QPEAETSQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=641893 LZG54_RS12645 WP_234114137.1 2631154..2632587(+) (pilR) [Acinetobacter towneri strain SCLZS30]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTAGTGCAAGCCAAGCAGTTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTACCTGTT
GCCGTATTGACCGCCTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAGTCTTTGCCTATTCAACAATTGCGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTATTTATTACAGGCGAATCGGGTACGGGAAAGGAAGTTGTCGCCAATTTGGTTCACCGTTTAAGTAA
CCGCAACGAAGGACCATTTATTGCAATTAACTGTGGTGCAATCCCCACCGAACTCATGGAAAGCGAGCTATTTGGACACA
AAAAAGGTAGCTTTACAGGAGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGTGGCAGCTTATTTTTAGAT
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGATAGTGAAATTGATGTCGATTTTCGTGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTCTTCCGTATTCACGTGATGGATTTGGTCTTGCCTGCCTTGCGTGAACGTGGACAAGATATTCTG
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGACATTCCTGCCAAACAACTGACACCTCGTGCCCAGCA
ATTTTTATTAGAACAGTACTATCCGGGTAATGTGCGTGAGTTACGCAATATTATTGAACGTGCCATTACCCTGAGTGATG
ATGATGTTATTGATCTCAAACACTTACAAACCGCACCCTTGCGCCAATTCAGTATAAGCAATACAGCAATAACTGAATCA
CAACCTGAAGCAGAAACCTCACAGCAGATCGTGACAGATGTATTGCTGACAGGGCGTAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACGTTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

77.406

100

0.776
  pilR Pseudomonas aeruginosa PAK

49.785

97.694

0.486