Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LZG54_RS01660 Genome accession   NZ_CP090382
Coordinates   348546..349181 (-) Length   211 a.a.
NCBI ID   WP_234114402.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343546..354181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01625 (LZG54_01630) mlaE 343760..344539 (+) 780 WP_004974646.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LZG54_RS01630 (LZG54_01635) - 344539..345216 (+) 678 WP_234114397.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LZG54_RS01635 (LZG54_01640) - 345232..345867 (+) 636 WP_234114398.1 phospholipid-binding protein MlaC -
  LZG54_RS01640 (LZG54_01645) - 345880..346167 (+) 288 WP_234114399.1 lipid asymmetry maintenance protein MlaB -
  LZG54_RS01645 (LZG54_01650) - 346286..347299 (-) 1014 WP_234114400.1 CorA family divalent cation transporter -
  LZG54_RS01650 (LZG54_01655) - 347454..348014 (+) 561 WP_234114979.1 TIGR00730 family Rossman fold protein -
  LZG54_RS01655 (LZG54_01660) - 348058..348471 (+) 414 WP_234114401.1 NUDIX hydrolase -
  LZG54_RS01660 (LZG54_01665) comF 348546..349181 (-) 636 WP_234114402.1 ComF family protein Machinery gene
  LZG54_RS01665 (LZG54_01670) recG 349200..351245 (-) 2046 WP_234114403.1 ATP-dependent DNA helicase RecG -
  LZG54_RS01670 (LZG54_01675) - 351282..352115 (+) 834 WP_234114404.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24560.59 Da        Isoelectric Point: 9.2748

>NTDB_id=641868 LZG54_RS01660 WP_234114402.1 348546..349181(-) (comF) [Acinetobacter towneri strain SCLZS30]
MTQPINLLQCGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRYCRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=641868 LZG54_RS01660 WP_234114402.1 348546..349181(-) (comF) [Acinetobacter towneri strain SCLZS30]
ATGACTCAGCCAATCAATCTACTACAATGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTATTGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAACAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTCGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.658

91.469

0.564
  comF Acinetobacter baumannii D1279779

61.14

91.469

0.559