Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LZG54_RS01420 Genome accession   NZ_CP090382
Coordinates   303974..304426 (+) Length   150 a.a.
NCBI ID   WP_179997171.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298974..309426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01415 (LZG54_01420) - 299673..303962 (+) 4290 WP_234114376.1 pilus assembly protein PilY -
  LZG54_RS01420 (LZG54_01425) comE 303974..304426 (+) 453 WP_179997171.1 type IV pilin protein Machinery gene
  LZG54_RS01425 (LZG54_01430) - 304420..304881 (+) 462 WP_234114377.1 type IV pilin protein -
  LZG54_RS01430 (LZG54_01435) rpsP 305020..305277 (+) 258 WP_004974526.1 30S ribosomal protein S16 -
  LZG54_RS01435 (LZG54_01440) rimM 305306..305854 (+) 549 WP_234114378.1 ribosome maturation factor RimM -
  LZG54_RS01440 (LZG54_01445) trmD 305897..306646 (+) 750 WP_234114379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LZG54_RS01445 (LZG54_01450) rplS 306821..307192 (+) 372 WP_004974529.1 50S ribosomal protein L19 -
  LZG54_RS01450 (LZG54_01455) - 307261..308232 (-) 972 WP_234114380.1 esterase/lipase family protein -
  LZG54_RS01455 (LZG54_01460) - 308405..309358 (-) 954 WP_234114381.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16413.57 Da        Isoelectric Point: 9.5787

>NTDB_id=641867 LZG54_RS01420 WP_179997171.1 303974..304426(+) (comE) [Acinetobacter towneri strain SCLZS30]
MNNTLSIQKGFTLIELMVVVVIVAIIAAIAIPSYQEYARRANAAQAQQEVQRLASELERWKSRNFNYLGFNLTPNTVQNY
TFVVRDGATGNPALTVAAASGTSWVIRAVHNDGRNFTFLMSSNGIRCKNKTSSNVTFTGCGTEATGSETW

Nucleotide


Download         Length: 453 bp        

>NTDB_id=641867 LZG54_RS01420 WP_179997171.1 303974..304426(+) (comE) [Acinetobacter towneri strain SCLZS30]
ATGAACAACACATTATCTATCCAAAAAGGTTTTACCTTAATTGAGCTGATGGTTGTGGTGGTGATTGTTGCAATTATTGC
AGCAATCGCTATTCCAAGTTATCAGGAATATGCACGTAGAGCTAACGCAGCACAAGCACAGCAGGAAGTGCAGCGTTTAG
CAAGTGAGCTTGAACGTTGGAAATCGCGTAATTTTAATTATTTAGGTTTTAATCTTACTCCAAATACTGTTCAAAACTAT
ACTTTTGTGGTTAGAGATGGTGCTACGGGAAATCCAGCTCTTACGGTTGCAGCAGCAAGTGGAACGAGTTGGGTAATACG
TGCTGTGCACAATGATGGTCGAAACTTTACATTCTTAATGAGTAGTAATGGAATTCGTTGTAAAAATAAAACCAGCAGCA
ATGTGACATTCACAGGATGTGGAACAGAGGCGACAGGGAGTGAGACATGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.81

100

0.547
  pilY2 Acinetobacter baumannii D1279779

48.701

100

0.5