Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LZ178_RS05240 Genome accession   NZ_CP090375
Coordinates   1092876..1093862 (+) Length   328 a.a.
NCBI ID   WP_000959279.1    Uniprot ID   A0A2S6DCY7
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1087876..1098862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS05220 (LZ178_05205) - 1088244..1089866 (+) 1623 WP_000406183.1 peptide ABC transporter substrate-binding protein -
  LZ178_RS05225 (LZ178_05210) trpS 1089986..1090975 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  LZ178_RS05230 (LZ178_05215) spxA 1091270..1091665 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  LZ178_RS05235 (LZ178_05220) mecA 1092036..1092755 (+) 720 WP_001217731.1 adaptor protein MecA -
  LZ178_RS05240 (LZ178_05225) coiA 1092876..1093862 (+) 987 WP_000959279.1 competence protein CoiA family protein Machinery gene
  LZ178_RS05245 (LZ178_05230) pepF 1093910..1095718 (+) 1809 WP_000082727.1 oligoendopeptidase F -
  LZ178_RS05250 (LZ178_05235) yjbH 1096178..1096984 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  LZ178_RS05255 (LZ178_05240) - 1097007..1097372 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LZ178_RS05260 (LZ178_05245) - 1097476..1098069 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  LZ178_RS05265 (LZ178_05250) - 1098255..1098602 (+) 348 WP_001242104.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38800.32 Da        Isoelectric Point: 9.4277

>NTDB_id=641805 LZ178_RS05240 WP_000959279.1 1092876..1093862(+) (coiA) [Staphylococcus aureus strain GD4SA108-1]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPISYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNVKMSELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGESILVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=641805 LZ178_RS05240 WP_000959279.1 1092876..1093862(+) (coiA) [Staphylococcus aureus strain GD4SA108-1]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTTCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGTCAAAATGAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAGAAAGCATATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCGATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

96.037

100

0.96