Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   LZ178_RS00380 Genome accession   NZ_CP090375
Coordinates   94048..95397 (-) Length   449 a.a.
NCBI ID   WP_031797628.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89048..100397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS00355 (LZ178_00355) - 89085..89597 (-) 513 WP_113587724.1 DUF1643 domain-containing protein -
  LZ178_RS00360 (LZ178_00360) - 89613..89924 (-) 312 WP_113587726.1 DUF960 family protein -
  LZ178_RS00365 (LZ178_00365) - 90020..90358 (-) 339 WP_113587728.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LZ178_RS00370 (LZ178_00370) - 90928..91857 (-) 930 WP_002506256.1 2-dehydropantoate 2-reductase -
  LZ178_RS00375 (LZ178_00375) ccrB 92398..94026 (-) 1629 WP_031869225.1 recombinase family protein Machinery gene
  LZ178_RS00380 (LZ178_00380) ccrA 94048..95397 (-) 1350 WP_031797628.1 recombinase family protein Machinery gene
  LZ178_RS00385 (LZ178_00385) - 95591..95869 (-) 279 WP_031797629.1 hypothetical protein -
  LZ178_RS00390 (LZ178_00390) - 95948..96265 (-) 318 WP_031797630.1 hypothetical protein -
  LZ178_RS00395 (LZ178_00395) - 96332..98077 (-) 1746 WP_224742988.1 DUF927 domain-containing protein -
  LZ178_RS00400 (LZ178_00400) - 98125..98415 (-) 291 WP_113587732.1 DUF1413 domain-containing protein -
  LZ178_RS00405 (LZ178_00405) - 98597..99598 (-) 1002 WP_031869229.1 hypothetical protein -
  LZ178_RS00410 (LZ178_00410) - 99782..100348 (+) 567 WP_031869230.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52553.34 Da        Isoelectric Point: 10.2599

>NTDB_id=641794 LZ178_RS00380 WP_031797628.1 94048..95397(-) (ccrA) [Staphylococcus aureus strain GD4SA108-1]
MNQAIGYLRQSTTKQQSLAAQKQTIESLAQKHQIKHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKHHVHILSVHDGYFDMDKSFDRLKLNIFISLAELESDNIGEQVKNGLKEKANQGKLITTHAPFGYRYH
NGTFTINTSEAHTVKAVFNYYLQGYGYKKISQRLETDSRMINRMPYQVRNIIINPNYCGRVINQYGQHDNMFPAIVSTTI
YEEAQAMRKQKQVERKPSKNRLKQKIKCPYCHSTLTNVTIRKPNRSLRYYVCSQNMNNARFVCNFKGINAQELEKQVLDI
CKEFFQNKQFHQKINSRIRQQLKQHQQLESQNNITQAQLIDKLAQGLIDAEAFKKQSQSITQNRKPLRSISEDQLQVSLQ
NVFQKSFTLNMLYPYIDEIHITKNKKLVGIYFKNEPLNIVKQQMQSSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=641794 LZ178_RS00380 WP_031797628.1 94048..95397(-) (ccrA) [Staphylococcus aureus strain GD4SA108-1]
ATGAATCAAGCTATTGGCTACTTACGTCAAAGTACAACCAAACAACAATCACTTGCAGCACAGAAACAAACCATTGAATC
ATTAGCCCAAAAACATCAGATCAAACACATTACATTCTATAGCGATAAACAATCTGGACGCACTGACAAGCGTAATGGTT
ACCAACAAATTACTGAACTAATTCAACAAGGACAATGTGACGTTTTATGTTGTTATCGTCTGAATCGACTACATCGAAAT
CTAAAAAATGCTTTAAAACTTATGAAACTATGCCAAAAGCATCATGTTCACATATTAAGTGTACATGACGGATATTTCGA
CATGGATAAATCTTTTGATCGTCTCAAACTAAATATTTTCATCAGTTTGGCCGAACTTGAATCCGATAATATTGGTGAAC
AAGTCAAAAACGGCCTCAAGGAAAAAGCGAATCAAGGCAAACTGATTACGACACATGCACCCTTTGGCTATCGTTATCAT
AATGGCACATTCACGATAAACACATCCGAAGCACATACTGTGAAAGCTGTATTCAACTACTATCTTCAGGGTTATGGATA
CAAAAAGATTTCACAACGCTTAGAAACCGACTCAAGAATGATAAATCGAATGCCCTATCAAGTTCGTAATATTATCATTA
ACCCTAATTACTGTGGACGAGTTATTAATCAGTATGGACAACATGACAACATGTTCCCAGCTATTGTCAGTACAACGATA
TATGAAGAAGCACAAGCTATGAGAAAGCAGAAACAAGTCGAACGTAAACCTTCAAAAAATCGACTCAAACAAAAGATCAA
ATGTCCCTATTGTCATTCAACACTTACAAATGTAACCATACGAAAACCAAATCGTTCATTGCGTTACTATGTCTGCTCAC
AGAATATGAATAACGCTCGCTTTGTTTGTAACTTCAAGGGAATAAATGCGCAAGAATTAGAAAAACAAGTCTTAGACATA
TGCAAAGAATTCTTTCAAAACAAACAATTCCATCAAAAGATAAATAGCAGAATCAGACAACAACTCAAACAACATCAACA
GTTAGAATCACAAAATAATATTACCCAAGCACAACTAATAGATAAATTGGCCCAGGGCTTAATTGATGCTGAAGCATTCA
AAAAACAGTCTCAATCAATAACTCAAAATCGTAAACCTCTACGCTCAATAAGCGAGGATCAATTACAAGTATCGCTACAA
AATGTATTTCAGAAAAGTTTCACGTTAAACATGCTGTATCCATACATCGATGAAATTCATATTACTAAAAATAAAAAGCT
AGTTGGTATCTATTTCAAAAATGAGCCATTGAATATTGTAAAACAACAGATGCAATCATCAATTGTCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-320)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.506

100

0.775
  ccrA Staphylococcus aureus N315

69.933

100

0.699