Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LZ178_RS00375 Genome accession   NZ_CP090375
Coordinates   92398..94026 (-) Length   542 a.a.
NCBI ID   WP_031869225.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87398..99026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS00345 (LZ178_00345) - 87825..88367 (-) 543 WP_239441230.1 hypothetical protein -
  LZ178_RS00350 (LZ178_00350) - 88345..88959 (-) 615 WP_113587722.1 hypothetical protein -
  LZ178_RS00355 (LZ178_00355) - 89085..89597 (-) 513 WP_113587724.1 DUF1643 domain-containing protein -
  LZ178_RS00360 (LZ178_00360) - 89613..89924 (-) 312 WP_113587726.1 DUF960 family protein -
  LZ178_RS00365 (LZ178_00365) - 90020..90358 (-) 339 WP_113587728.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LZ178_RS00370 (LZ178_00370) - 90928..91857 (-) 930 WP_002506256.1 2-dehydropantoate 2-reductase -
  LZ178_RS00375 (LZ178_00375) ccrB 92398..94026 (-) 1629 WP_031869225.1 recombinase family protein Machinery gene
  LZ178_RS00380 (LZ178_00380) ccrA 94048..95397 (-) 1350 WP_031797628.1 recombinase family protein Machinery gene
  LZ178_RS00385 (LZ178_00385) - 95591..95869 (-) 279 WP_031797629.1 hypothetical protein -
  LZ178_RS00390 (LZ178_00390) - 95948..96265 (-) 318 WP_031797630.1 hypothetical protein -
  LZ178_RS00395 (LZ178_00395) - 96332..98077 (-) 1746 WP_224742988.1 DUF927 domain-containing protein -
  LZ178_RS00400 (LZ178_00400) - 98125..98415 (-) 291 WP_113587732.1 DUF1413 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62412.06 Da        Isoelectric Point: 9.7373

>NTDB_id=641793 LZ178_RS00375 WP_031869225.1 92398..94026(-) (ccrB) [Staphylococcus aureus strain GD4SA108-1]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCNFNNFAIEDVYADRGISGKSMNRPELQRLLKDAKEGHIDAVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYEKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIVHCPQCGSPMAASNTTNTLKN
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQLIEIVKSDKVINQVVKRVNKDNQVDIAALNHDVAYKEQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQIAAILQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=641793 LZ178_RS00375 WP_031869225.1 92398..94026(-) (ccrB) [Staphylococcus aureus strain GD4SA108-1]
TTGCAACAACTCAAACAAAAACGTGTTGGTATCTATGTTCGTGTATCGACAGAGATGCAAAGTACAGAGGGATATAGTAT
CGACGGACAAATCAATCAAATCAGAGAATACTGTAATTTTAATAACTTCGCAATTGAAGACGTATACGCAGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCCGAATTACAACGCTTACTAAAAGATGCAAAAGAAGGACATATCGATGCTGTTATG
GTCTACAAAACAAATCGCTTAGCACGTAACACCTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGTTACAAATTCTAGCAAGCTTCTCTG
AATTCGAACGCAATAACATTGTCGAGAATGTATTCATGGGACAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
ATTCCACTTGGCTATGAGAAAATTCCAGACAATAAACATGAACTCATGATAAACCAACATGAAGCCAATATTGTAAAATA
TATATTTGAGTCATATGCTAAAGGTCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCATACATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAA
TATAAAGATTGGAATGAAAAGCGACGTAAAGGACTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCCCAATGCGGATCGCCTATGGCGGCGAGCAATACAACTAATACACTCAAAAAT
GGAACTAAGAAACGTATCCGCTATTATTCATGTAGTAATTTTCGCAACAAAGGATCAAAGGTGTGCTCTGCGAATAGTGT
GAGAGCTGATGTCATAGAAAAATATGTCATGGATCAACTAATCGAAATTGTCAAAAGTGATAAAGTCATCAACCAAGTCG
TAAAACGGGTCAACAAGGATAATCAAGTTGATATAGCTGCATTGAATCATGATGTCGCTTATAAGGAACAACAATTTGAT
GAAATAAACACTAAACTTAAAAATCTAGTTCAAACCATTGAAGACAATCCAGACTTAACATCTGCGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGACATTACAAACCAAATTAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTATGATACGAAACAAATCGCTGCCATATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.764

100

0.838