Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   LZ178_RS00290 Genome accession   NZ_CP090375
Coordinates   70419..71768 (-) Length   449 a.a.
NCBI ID   WP_257241420.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65419..76768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS00255 (LZ178_00255) - 65977..66360 (-) 384 WP_194376062.1 MaoC family dehydratase -
  LZ178_RS00260 (LZ178_00260) - 66351..66716 (+) 366 Protein_49 CDP-glycerol glycerophosphotransferase family protein -
  LZ178_RS00265 (LZ178_00265) - 66793..67014 (-) 222 WP_023604758.1 hypothetical protein -
  LZ178_RS00270 (LZ178_00270) - 67029..67538 (-) 510 WP_194376037.1 DUF1643 domain-containing protein -
  LZ178_RS00275 (LZ178_00275) - 67556..67867 (-) 312 WP_257241422.1 DUF960 domain-containing protein -
  LZ178_RS00280 (LZ178_00280) - 67954..68304 (-) 351 WP_218775036.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LZ178_RS00285 (LZ178_00285) ccrB 68769..70397 (-) 1629 WP_257241421.1 recombinase family protein Machinery gene
  LZ178_RS00290 (LZ178_00290) ccrA 70419..71768 (-) 1350 WP_257241420.1 recombinase family protein Machinery gene
  LZ178_RS00295 (LZ178_00295) - 71956..73722 (-) 1767 WP_257241419.1 DUF927 domain-containing protein -
  LZ178_RS00300 (LZ178_00300) - 73722..74036 (-) 315 WP_257241418.1 hypothetical protein -
  LZ178_RS00305 (LZ178_00305) - 74300..75853 (-) 1554 WP_257241417.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52187.98 Da        Isoelectric Point: 9.9728

>NTDB_id=641792 LZ178_RS00290 WP_257241420.1 70419..71768(-) (ccrA) [Staphylococcus aureus strain GD4SA108-1]
MKQAIGYLRQSTTKQQSLTAQKQTIEALAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFYYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSISI
YEQAQAIRVNKQVKRTPSANLLKQKIKCPYCGSTLTNMAIRKKNHTLRYYVCPQNLNASRFVCEFKGINAQELETSVLTT
CQDFFQNQQLYSKINHTIQQRLKRQRMHDTSNTLTQEKLIENLAQGKIDVETFREQSQSINLQNKPIQAISDIRIKASLQ
KVIQKSFTLNMLHPYIDEIHITKNKELSGIYLKDAPLNIVNQVIQSSTA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=641792 LZ178_RS00290 WP_257241420.1 70419..71768(-) (ccrA) [Staphylococcus aureus strain GD4SA108-1]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAGC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGCGATAAGCAATCAGGCAGAACGGATAATCGAACAGGTT
ATCAACAAGTCATCGAACGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGTTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGTACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGGCAATATTCTATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGATCAGTATA
TACGAACAAGCTCAAGCAATACGAGTAAATAAACAAGTAAAGCGCACACCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTATTGTGGTTCAACCCTTACCAATATGGCCATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCTCGTTTTGTCTGTGAATTCAAGGGTATCAACGCACAAGAATTAGAAACAAGTGTCTTAACGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGGAAAAGCTTATTGAAAATTTAGCACAAGGAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATATTCGTATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGCGCCACTAAACATTGTTAATCAAGTGATACAATCATCAACTGCCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-248)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

80.761

99.555

0.804
  ccrA Staphylococcus aureus N315

71.938

100

0.719