Detailed information NTG0641762

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: LY257_RS07365
• Genome accession: NZ_CP090367
• Coordinates: 1516885..1517940 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786653.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain CCUG 17875
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1511885..1522940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY257_RS07340 (LY257_07285)	-	1512407..1513834 (-)	1428	WP_000694864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LY257_RS07345 (LY257_07290)	comB10	1513904..1515034 (-)	1131	WP_001045886.1	DNA type IV secretion system protein ComB10	Machinery gene
LY257_RS07350 (LY257_07295)	comB9	1515027..1516022 (-)	996	WP_001864273.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LY257_RS07355 (LY257_07300)	comB8	1516022..1516759 (-)	738	WP_001208410.1	virB8 family protein	Machinery gene
LY257_RS07360 (LY257_07305)	comB7	1516756..1516869 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
LY257_RS07365 (LY257_07310)	comB6	1516885..1517940 (-)	1056	WP_000786653.1	P-type conjugative transfer protein TrbL	Machinery gene
LY257_RS07370 (LY257_07315)	-	1517948..1518943 (-)	996	WP_000468494.1	PDZ domain-containing protein	-
LY257_RS07375 (LY257_07320)	-	1518943..1519236 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
LY257_RS07380 (LY257_07325)	panD	1519247..1519597 (-)	351	WP_000142228.1	aspartate 1-decarboxylase	-
LY257_RS07385 (LY257_07330)	-	1519587..1521812 (-)	2226	WP_001051484.1	ATP-dependent Clp protease ATP-binding subunit	-
LY257_RS07390 (LY257_07335)	-	1521812..1522087 (-)	276	WP_000784904.1	ATP-dependent Clp protease adaptor ClpS	-
LY257_RS07395 (LY257_07340)	-	1522118..1522531 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39637.62 Da
• Isoelectric Point: 9.0406

>NTDB_id=641762 LY257_RS07365 WP_000786653.1 1516885..1517940(-) (comB6) [Helicobacter pylori strain CCUG 17875]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKSFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=641762 LY257_RS07365 WP_000786653.1 1516885..1517940(-) (comB6) [Helicobacter pylori strain CCUG 17875]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAATTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGACTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGTCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96