Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   LY257_RS07355 Genome accession   NZ_CP090367
Coordinates   1516022..1516759 (-) Length   245 a.a.
NCBI ID   WP_001208410.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511022..1521759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS07335 (LY257_07280) gmd 1511262..1512407 (-) 1146 WP_000659812.1 GDP-mannose 4,6-dehydratase -
  LY257_RS07340 (LY257_07285) - 1512407..1513834 (-) 1428 WP_000694864.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  LY257_RS07345 (LY257_07290) comB10 1513904..1515034 (-) 1131 WP_001045886.1 DNA type IV secretion system protein ComB10 Machinery gene
  LY257_RS07350 (LY257_07295) comB9 1515027..1516022 (-) 996 WP_001864273.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  LY257_RS07355 (LY257_07300) comB8 1516022..1516759 (-) 738 WP_001208410.1 virB8 family protein Machinery gene
  LY257_RS07360 (LY257_07305) comB7 1516756..1516869 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  LY257_RS07365 (LY257_07310) comB6 1516885..1517940 (-) 1056 WP_000786653.1 P-type conjugative transfer protein TrbL Machinery gene
  LY257_RS07370 (LY257_07315) - 1517948..1518943 (-) 996 WP_000468494.1 PDZ domain-containing protein -
  LY257_RS07375 (LY257_07320) - 1518943..1519236 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  LY257_RS07380 (LY257_07325) panD 1519247..1519597 (-) 351 WP_000142228.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28468.66 Da        Isoelectric Point: 8.9830

>NTDB_id=641760 LY257_RS07355 WP_001208410.1 1516022..1516759(-) (comB8) [Helicobacter pylori strain CCUG 17875]
MREKPFNSEQLVFLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQKADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=641760 LY257_RS07355 WP_001208410.1 1516022..1516759(-) (comB8) [Helicobacter pylori strain CCUG 17875]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTAGTCTTTTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTTTTAGGTTTGATGAGCTTTATCGCGCTTATCTTAGCGATCGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAAAGCGGATAAAAGCATTTCCAGCAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTTTTGAACGAAAACAAATTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGTTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971