Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LY257_RS05815 Genome accession   NZ_CP090367
Coordinates   1193829..1194233 (-) Length   134 a.a.
NCBI ID   WP_000599144.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188829..1199233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS05775 (LY257_05725) - 1189565..1189789 (-) 225 WP_000426626.1 hypothetical protein -
  LY257_RS05780 (LY257_05730) - 1189779..1190564 (-) 786 WP_000119822.1 hypothetical protein -
  LY257_RS05785 (LY257_05735) - 1190564..1190945 (-) 382 Protein_1122 DUF1294 domain-containing protein -
  LY257_RS05790 (LY257_05740) - 1191248..1191514 (-) 267 WP_025444753.1 hypothetical protein -
  LY257_RS05795 (LY257_05745) - 1191502..1191904 (-) 403 Protein_1124 glycoside hydrolase family protein -
  LY257_RS05800 (LY257_05750) - 1191934..1192494 (-) 561 WP_000038906.1 hypothetical protein -
  LY257_RS05805 (LY257_05755) - 1192478..1192816 (-) 339 WP_000699883.1 hypothetical protein -
  LY257_RS05810 (LY257_05760) - 1192931..1193602 (-) 672 WP_189394268.1 tetratricopeptide repeat protein -
  LY257_RS05815 (LY257_05765) dprB 1193829..1194233 (-) 405 WP_000599144.1 Holliday junction resolvase RuvX Machinery gene
  LY257_RS05820 (LY257_05770) dprA 1194230..1195030 (-) 801 WP_000841136.1 DNA-processing protein DprA Machinery gene
  LY257_RS05825 (LY257_05775) minE 1195042..1195275 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  LY257_RS05830 (LY257_05780) minD 1195272..1196078 (-) 807 WP_054833651.1 septum site-determining protein MinD -
  LY257_RS05835 (LY257_05785) ilvC 1196102..1197094 (-) 993 WP_001207770.1 ketol-acid reductoisomerase -
  LY257_RS05845 (LY257_05795) - 1197343..1198125 (+) 783 WP_001168280.1 NAD+ synthase -
  LY257_RS05850 (LY257_05800) - 1198122..1199060 (+) 939 WP_000833915.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15157.55 Da        Isoelectric Point: 8.2735

>NTDB_id=641755 LY257_RS05815 WP_000599144.1 1193829..1194233(-) (dprB) [Helicobacter pylori strain CCUG 17875]
MILACDVGLKRIGIAALLNGIILPLEAILRHNRNQASRDLSDLLREKSIQVLVVGKPNESYADTNERIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=641755 LY257_RS05815 WP_000599144.1 1193829..1194233(-) (dprB) [Helicobacter pylori strain CCUG 17875]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCACTTTTAAACGGCATTATTTTACCTTTGGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAGCATTCAAGTGCTAGTGG
TGGGTAAGCCTAATGAAAGCTATGCAGATACGAACGAGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATTTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933