Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LW136_RS03085 Genome accession   NZ_CP090366
Coordinates   674744..676336 (-) Length   530 a.a.
NCBI ID   WP_041015969.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 669744..681336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS03070 (LW136_03070) - 670335..671930 (-) 1596 WP_234174635.1 response regulator -
  LW136_RS03075 (LW136_03075) - 672146..673204 (+) 1059 WP_234174636.1 DUF2333 family protein -
  LW136_RS03080 (LW136_03080) pilR 673282..674619 (-) 1338 WP_125875634.1 sigma-54-dependent transcriptional regulator Regulator
  LW136_RS03085 (LW136_03085) pilS 674744..676336 (-) 1593 WP_041015969.1 sensor histidine kinase Regulator
  LW136_RS03090 (LW136_03090) - 676326..676559 (-) 234 WP_014819063.1 PP0621 family protein -
  LW136_RS03095 (LW136_03095) - 676676..677665 (-) 990 WP_234174637.1 outer membrane protein assembly factor BamD -
  LW136_RS03100 (LW136_03100) rluD 677871..678845 (+) 975 WP_234174638.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LW136_RS03105 (LW136_03105) pgeF 678842..679576 (+) 735 WP_234174639.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58861.94 Da        Isoelectric Point: 7.8132

>NTDB_id=641717 LW136_RS03085 WP_041015969.1 674744..676336(-) (pilS) [Stutzerimonas kunmingensis strain 7850S]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNPRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=641717 LW136_RS03085 WP_041015969.1 674744..676336(-) (pilS) [Stutzerimonas kunmingensis strain 7850S]
GTGGGCACTGAAAACCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACTAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTCGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGGCTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTCGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACGG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGCATCATGGTGCTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAATTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCACGCTGCCCGGAACTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCGCCGAACCTCAGAGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCGCTTCAGCACGGCAACAAGCTCGACACACTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCGCAGAAGGCACAACAGCTCAAGCTCGCCTCCCTCGGACGCCTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGCCATGCCGCGCAGCTGCTTCAGGAATCCGAAGAACTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCACGGCGGATGAACCTGGTGATCGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGCTGCATCGTTTCGCCAGCGAGTTCCGCCAGGGGCTCGGCCCGCAG
CAGACCCTGCACCTGGATACCGTGGGCAGCTCGCTGCAGACCCGCATGGATCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTCCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCCGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTTCAGAACATCTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGTCCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-240)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662