Detailed information NTG0641716

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LW136_RS03080
• Genome accession: NZ_CP090366
• Coordinates: 673282..674619 (-)
• Length: 445 a.a.
• NCBI ID: WP_125875634.1
• Uniprot ID: A0A3R8V7V7
• Organism: Stutzerimonas kunmingensis strain 7850S
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 668282..679619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LW136_RS03070 (LW136_03070)	-	670335..671930 (-)	1596	WP_234174635.1	response regulator	-
LW136_RS03075 (LW136_03075)	-	672146..673204 (+)	1059	WP_234174636.1	DUF2333 family protein	-
LW136_RS03080 (LW136_03080)	pilR	673282..674619 (-)	1338	WP_125875634.1	sigma-54-dependent transcriptional regulator	Regulator
LW136_RS03085 (LW136_03085)	pilS	674744..676336 (-)	1593	WP_041015969.1	sensor histidine kinase	Regulator
LW136_RS03090 (LW136_03090)	-	676326..676559 (-)	234	WP_014819063.1	PP0621 family protein	-
LW136_RS03095 (LW136_03095)	-	676676..677665 (-)	990	WP_234174637.1	outer membrane protein assembly factor BamD	-
LW136_RS03100 (LW136_03100)	rluD	677871..678845 (+)	975	WP_234174638.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LW136_RS03105 (LW136_03105)	pgeF	678842..679576 (+)	735	WP_234174639.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49481.93 Da
• Isoelectric Point: 6.3298

>NTDB_id=641716 LW136_RS03080 WP_125875634.1 673282..674619(-) (pilR) [Stutzerimonas kunmingensis strain 7850S]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLELVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVGTALRLRAPTAEMPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLAEAM
LRRLAAECGDSSAHLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGVSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=641716 LW136_RS03080 WP_125875634.1 673282..674619(-) (pilR) [Stutzerimonas kunmingensis strain 7850S]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCGGATATCCGCGAACTGCTGGAAATCACTCTTGGCCGCAT
GAAACTCGATACCCGCAGCGCTCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCCCGCGAGCATTACGATCTGTGCCTTA
CCGATATGCGCCTGCCCGATGGCAGCGGCCTGGAGCTGGTGCAATACATTCAGCAACAGCACCCGCAGCTGCCGGTGGCG
ATGATCACTGCATACGGCAGCCTGGATACCGCCATTGGCGCGCTCAAGGCCGGGGCATTCGACTTTCTCACCAAACCGGT
GGACCTCAACCGCTTGCGCGAGCTGGTCGGCACGGCCCTGCGCCTGAGGGCGCCTACAGCGGAAATGCCGGTGGACAGCC
GCCTGCTCGGCAGCTCGCCACCCATGAAGACCCTTCGCAAGCAGATCGGCAAACTCGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGACTGATTCACGAGCAGGGTCCTCGTAGTGAAAAGCCCTT
TGTGCCCGTCAACTGCGGCGCGATCCCGTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCAGTG
GCGCCATCGAGGACAAGCCCGGGCTATTCCAGGCCGCCAATGGCGGCACGCTGTTCCTCGACGAGGTAGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAAGCTGTACGCGCGGTCGGCGGCGCTCAGGAAGTAATGGT
CGATGTGCGCATCCTTTGCGCCACCCACAAGGACCTCGCCAGCGAAGTGGCCGCAGGCCGTTTCCGCCAGGATCTGTATT
ACCGCTTGAATGTCATCGAACTGCGCGTGCCGCCACTGCGCGAGCGTCGCGAAGACATTGGCCTGCTCGCCGAAGCCATG
CTTCGGCGTCTTGCGGCGGAGTGCGGTGACAGCAGCGCTCACCTGCACCCGGATGCTCTGGCCAAGCTGGAAAACTATCG
CTTCCCGGGGAACGTTCGTGAGCTGGAGAACATGCTCGAGCGGGCCTACACACTCTGCGAGGGCGATGAGATCAAGGCGG
GCGATCTACGCTTGGCAGACAGCCCAGGCGTATCGGAGAACGGTGAAGCCAGTCTGGCGCAGATCGACAATCTGGAAGAT
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCGGCAGCCCAACG
GCTGGGGCTGACCTTCCGTTCGATGCGTTACCGGTTGAAAAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A3R8V7V7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	85.811	99.775	0.856
pilR	Acinetobacter baumannii strain A118	50.109	100	0.517
luxO	Vibrio cholerae strain A1552	37.584	100	0.378