Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U722_RS02000 Genome accession   NC_023073
Coordinates   421924..422877 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416924..427877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS01980 (U722_02030) - 416968..418401 (+) 1434 WP_161625271.1 sensor histidine kinase -
  U722_RS01985 (U722_02040) rapC 418554..419702 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  U722_RS01990 (U722_02045) phrC 419686..419805 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U722_RS19130 - 419955..420065 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  U722_RS01995 (U722_02050) - 420145..421509 (-) 1365 WP_003156333.1 aspartate kinase -
  U722_RS02000 (U722_02055) ceuB 421924..422877 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  U722_RS02005 (U722_02060) - 422867..423814 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  U722_RS02010 (U722_02065) - 423808..424566 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  U722_RS02015 (U722_02070) - 424588..425532 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  U722_RS02020 (U722_02075) - 425574..426995 (-) 1422 WP_014304342.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=64169 U722_RS02000 WP_003156332.1 421924..422877(+) (ceuB) [Bacillus amyloliquefaciens LFB112]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=64169 U722_RS02000 WP_003156332.1 421924..422877(+) (ceuB) [Bacillus amyloliquefaciens LFB112]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment