Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   U722_RS01990 Genome accession   NC_023073
Coordinates   419686..419805 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus amyloliquefaciens LFB112     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 414686..424805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS01975 (U722_02025) - 416298..416981 (+) 684 WP_024084885.1 response regulator transcription factor -
  U722_RS01980 (U722_02030) - 416968..418401 (+) 1434 WP_161625271.1 sensor histidine kinase -
  U722_RS01985 (U722_02040) rapC 418554..419702 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  U722_RS01990 (U722_02045) phrC 419686..419805 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U722_RS19130 - 419955..420065 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  U722_RS01995 (U722_02050) - 420145..421509 (-) 1365 WP_003156333.1 aspartate kinase -
  U722_RS02000 (U722_02055) ceuB 421924..422877 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  U722_RS02005 (U722_02060) - 422867..423814 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  U722_RS02010 (U722_02065) - 423808..424566 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=64168 U722_RS01990 WP_003156334.1 419686..419805(+) (phrC) [Bacillus amyloliquefaciens LFB112]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=64168 U722_RS01990 WP_003156334.1 419686..419805(+) (phrC) [Bacillus amyloliquefaciens LFB112]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment