Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LXN51_RS01460 Genome accession   NZ_CP090355
Coordinates   311817..314060 (-) Length   747 a.a.
NCBI ID   WP_234205796.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306817..319060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS01425 (LXN51_01425) murB 307217..308236 (-) 1020 WP_085704754.1 UDP-N-acetylmuramate dehydrogenase -
  LXN51_RS01430 (LXN51_01430) - 308233..308697 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  LXN51_RS01435 (LXN51_01435) kdsB 308697..309461 (-) 765 WP_085704756.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LXN51_RS01440 (LXN51_01440) - 309458..309643 (-) 186 WP_003179363.1 Trm112 family protein -
  LXN51_RS01445 (LXN51_01445) lpxK 309668..310678 (-) 1011 WP_085697004.1 tetraacyldisaccharide 4'-kinase -
  LXN51_RS01450 (LXN51_01450) - 310678..311106 (-) 429 WP_085697005.1 ExbD/TolR family protein -
  LXN51_RS01455 (LXN51_01455) exbB 311103..311738 (-) 636 WP_085704813.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LXN51_RS01460 (LXN51_01460) comA 311817..314060 (-) 2244 WP_234205796.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LXN51_RS01465 (LXN51_01465) - 314197..314715 (+) 519 WP_085697008.1 DUF2062 domain-containing protein -
  LXN51_RS01470 (LXN51_01470) - 314770..315549 (-) 780 WP_085697009.1 ABC transporter permease -
  LXN51_RS01475 (LXN51_01475) - 315546..316478 (-) 933 WP_085697010.1 ABC transporter ATP-binding protein -
  LXN51_RS01480 (LXN51_01480) - 316610..317233 (-) 624 WP_085704759.1 glutathione S-transferase family protein -
  LXN51_RS01485 (LXN51_01485) - 317277..317936 (-) 660 WP_085704761.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 81980.92 Da        Isoelectric Point: 9.8944

>NTDB_id=641630 LXN51_RS01460 WP_234205796.1 311817..314060(-) (comA) [Pseudomonas kribbensis strain H38E-23]
MRTGMMALAAGLLAAVFLPALPPVGVLVVLPWVALMLLPFRSYPLAFLLLGFTWAGFNAQMALNDRLPHRLDGETRWVEG
RVVGLPQNAESVVRFELADAHSRHEKLPSLMRLAWYAGPEVKSGERWRVAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TMKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQSLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFDGVLLMDPL
ASLRPGLWLSFAAVGVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPHVGEGLLWLAGGLIDGLFSTLALIAGRWPAWVPPTMQGWVWVLGGLGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRELLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGMTVRRIISGDPPGLPEALTAEACESGRQWQWDGVAFQLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLDSVLAVHTQWLQAPHHGSRSSSSMALLKALQPRAVLISRGQGNSFGHPHPTVIARYRKQGVHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLSEAEYR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=641630 LXN51_RS01460 WP_234205796.1 311817..314060(-) (comA) [Pseudomonas kribbensis strain H38E-23]
ATGCGCACAGGGATGATGGCGCTGGCAGCCGGTCTGCTGGCTGCGGTTTTTTTACCGGCCTTGCCGCCGGTCGGGGTATT
GGTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGCTTGGATTCACAT
GGGCGGGTTTCAACGCGCAGATGGCGCTTAATGATCGACTGCCTCACCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGGGTCGTCGGCTTGCCGCAGAATGCGGAGAGCGTCGTGCGCTTTGAACTGGCCGATGCGCACTCACGTCACGAGAAGCT
GCCATCACTGATGCGTCTGGCCTGGTATGCCGGGCCTGAGGTCAAAAGTGGCGAACGCTGGCGAGTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGCTCAATCCAGATGCGTTCGATTATGAAGCCTGGCTGTTGGCGCAGCGCATCGGCGCCACCGGG
ACGATGAAGGATGGCCAGCGTCTGGCGCCGGCGCAGTGGGCCTGGCGCGACAGCATTCGTCAGCGCTTGCTTGCGGTGGA
TGCTCAGGGACGCAACGGAGCCTTGGCCGCGTTGGTGCTGGGCGATGGCTCGGGACTCAGTCGCGAAGACTGGCAGTCCT
TGCAGGATACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATTGGGCTGTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGGCTGGCAAGGGTCGGGATTTGGCCGTTGCGTTGGCCCTGGCTGCCTTGGGCGTGTGGTCTGGCGTTCACGGC
GGCGCTGGGTTACGGCCTGCTGGCCGGGTTCGACGTGCCGGTGCGGCGGGCGTGCGTAATGGTTGCACTGGTGTTGTTGT
GGCGTTTGCGTTTTCGCCATCTCGGTGCGTGGTGGCCGTTGCTGCTGGCGTTCGACGGCGTGTTGTTGATGGATCCGCTG
GCCAGCCTGCGTCCCGGGTTGTGGCTGTCATTCGCGGCAGTGGGTGTTTTGATCTTTACCTTCGGCGGCCGACTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACGCGCGCGCAATGGCTGATCGCGATCGGCTTGTGCCCGGTGTTGGTGGCGTTGAGCC
TGCCGATCAGCCTCAGTGGGCCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGCTG
CTGGGCACTTTGTTGCTGCCAATCCCTCATGTCGGGGAAGGGTTGCTGTGGCTGGCCGGCGGGCTGATCGATGGCTTGTT
CAGCACGCTGGCCCTGATTGCCGGGCGTTGGCCGGCGTGGGTGCCGCCGACGATGCAAGGGTGGGTCTGGGTGCTGGGAG
GTCTTGGTGCCGTGTTGTTATTGCTGCCCCGGGGCGTTCCTTTGCGTCCATTGGGTTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCGCCGCGAGAGCTTCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTCGACGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACCCGCCATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGTGACTTCGACCTCGGCGAGCGAGTGGTGCTGC
CGGCATTGCGCAAACTTGGGGTGGAACACCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGACCACGCAGGTGGCGCG
CTCGCCGTGGCGAAAGGGATGACTGTCAGGCGGATCATCAGCGGCGATCCGCCGGGGCTGCCCGAAGCGCTGACCGCCGA
GGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTTGCCTTTCAGCTATGGCAGTGGGCCGACGCCCATGACAGCA
ACCAGCGGTCCTGCGTCCTGCAGATCGAAGCCAATGGCGAACGCTTGCTGTTGACCGGCGACATCGACAGCGCTGCCGAG
CGGGACCTGCTCGACAGCGTGCTGGCAGTTCATACCCAATGGCTGCAAGCCCCGCATCACGGCAGCCGCAGTTCCTCTTC
GATGGCCTTGCTCAAGGCTTTGCAGCCCCGGGCCGTGCTGATTTCCCGAGGGCAAGGCAATTCATTCGGCCATCCGCACC
CGACCGTCATTGCCCGCTACCGCAAACAGGGAGTGCATATCCACGACAGCGCCGAGCAGGGTGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGGTTCTGGCGCGACCCGCCGTTGTCGGAGGCAGAGTACCG
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.448

96.252

0.601