Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LXN51_RS01455 Genome accession   NZ_CP090355
Coordinates   311103..311738 (-) Length   211 a.a.
NCBI ID   WP_085704813.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306103..316738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS01420 (LXN51_01420) - 306487..306957 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  LXN51_RS01425 (LXN51_01425) murB 307217..308236 (-) 1020 WP_085704754.1 UDP-N-acetylmuramate dehydrogenase -
  LXN51_RS01430 (LXN51_01430) - 308233..308697 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  LXN51_RS01435 (LXN51_01435) kdsB 308697..309461 (-) 765 WP_085704756.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LXN51_RS01440 (LXN51_01440) - 309458..309643 (-) 186 WP_003179363.1 Trm112 family protein -
  LXN51_RS01445 (LXN51_01445) lpxK 309668..310678 (-) 1011 WP_085697004.1 tetraacyldisaccharide 4'-kinase -
  LXN51_RS01450 (LXN51_01450) - 310678..311106 (-) 429 WP_085697005.1 ExbD/TolR family protein -
  LXN51_RS01455 (LXN51_01455) exbB 311103..311738 (-) 636 WP_085704813.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LXN51_RS01460 (LXN51_01460) comA 311817..314060 (-) 2244 WP_234205796.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LXN51_RS01465 (LXN51_01465) - 314197..314715 (+) 519 WP_085697008.1 DUF2062 domain-containing protein -
  LXN51_RS01470 (LXN51_01470) - 314770..315549 (-) 780 WP_085697009.1 ABC transporter permease -
  LXN51_RS01475 (LXN51_01475) - 315546..316478 (-) 933 WP_085697010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22772.87 Da        Isoelectric Point: 6.8764

>NTDB_id=641629 LXN51_RS01455 WP_085704813.1 311103..311738(-) (exbB) [Pseudomonas kribbensis strain H38E-23]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNTEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVSALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=641629 LXN51_RS01455 WP_085704813.1 311103..311738(-) (exbB) [Pseudomonas kribbensis strain H38E-23]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATTTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACACGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAGCGCGCTGGGCACCATCGCTGCGATGTCGCCGTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCTTTCACCGGTTCCGGCATGACCACCAACGCTGCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844