Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LXN03_RS24200 Genome accession   NZ_CP090348
Coordinates   5197176..5197733 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA8329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5192176..5202733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN03_RS24180 (LXN03_24180) pilR 5193452..5194789 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LXN03_RS24185 (LXN03_24185) thiO 5194835..5195929 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  LXN03_RS24190 (LXN03_24190) - 5196064..5196573 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  LXN03_RS24195 (LXN03_24195) - 5196679..5197185 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LXN03_RS24200 (LXN03_24200) pilV 5197176..5197733 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LXN03_RS24205 (LXN03_24205) pilW 5197730..5198554 (+) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  LXN03_RS24210 (LXN03_24210) pilX 5198551..5199138 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LXN03_RS24215 (LXN03_24215) pilY1 5199150..5202641 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=641554 LXN03_RS24200 WP_003119423.1 5197176..5197733(+) (pilV) [Pseudomonas aeruginosa strain PA8329]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=641554 LXN03_RS24200 WP_003119423.1 5197176..5197733(+) (pilV) [Pseudomonas aeruginosa strain PA8329]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995