Detailed information NTG0641484

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IUD23_RS05865
• Genome accession: NZ_CP090316
• Coordinates: 1307641..1309053 (+)
• Length: 470 a.a.
• NCBI ID: WP_020851962.1
• Uniprot ID: A0A9Q4QU34
• Organism: Xylella fastidiosa subsp. morus strain Riv16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1302641..1314053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD23_RS05850 (IUD23_05850)	sucD	1303525..1304397 (-)	873	WP_038228610.1	succinate--CoA ligase subunit alpha	-
IUD23_RS05855 (IUD23_05855)	sucC	1304426..1305589 (-)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
IUD23_RS05860 (IUD23_05860)	-	1305844..1307454 (+)	1611	WP_038228612.1	ATP-binding protein	-
IUD23_RS05865 (IUD23_05865)	pilR	1307641..1309053 (+)	1413	WP_020851962.1	sigma-54 dependent transcriptional regulator	Regulator
IUD23_RS05870 (IUD23_05870)	pilB	1309147..1310880 (-)	1734	WP_012338105.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IUD23_RS05875 (IUD23_05875)	-	1311720..1312154 (-)	435	WP_038228615.1	pilin	-
IUD23_RS05880 (IUD23_05880)	-	1312987..1313214 (+)	228	WP_012338102.1	hypothetical protein	-
IUD23_RS05885 (IUD23_05885)	-	1313459..1313905 (-)	447	WP_040123054.1	pilin	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51368.35 Da
• Isoelectric Point: 7.2158

>NTDB_id=641484 IUD23_RS05865 WP_020851962.1 1307641..1309053(+) (pilR) [Xylella fastidiosa subsp. morus strain Riv16]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=641484 IUD23_RS05865 WP_020851962.1 1307641..1309053(+) (pilR) [Xylella fastidiosa subsp. morus strain Riv16]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTTCCGATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.635	99.787	0.585
pilR	Acinetobacter baumannii strain A118	46.822	100	0.47