Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LZV00_RS01550 Genome accession   NZ_CP090311
Coordinates   318274..318909 (+) Length   211 a.a.
NCBI ID   WP_162530197.1    Uniprot ID   A0A7X1GH78
Organism   Pseudomonas kielensis strain 5BT     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313274..323909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZV00_RS01530 (LZV00_01525) - 313512..314444 (+) 933 WP_166591295.1 ABC transporter ATP-binding protein -
  LZV00_RS01535 (LZV00_01530) - 314441..315220 (+) 780 WP_166591296.1 ABC transporter permease -
  LZV00_RS01540 (LZV00_01535) - 315271..315792 (-) 522 WP_095167612.1 DUF2062 domain-containing protein -
  LZV00_RS01545 (LZV00_01540) comA 315928..318168 (+) 2241 WP_166591297.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LZV00_RS01550 (LZV00_01545) exbB 318274..318909 (+) 636 WP_162530197.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LZV00_RS01555 (LZV00_01550) - 318906..319334 (+) 429 WP_166591298.1 biopolymer transporter ExbD -
  LZV00_RS01560 (LZV00_01555) lpxK 319334..320344 (+) 1011 WP_166591299.1 tetraacyldisaccharide 4'-kinase -
  LZV00_RS01565 (LZV00_01560) - 320368..320553 (+) 186 WP_095167619.1 Trm112 family protein -
  LZV00_RS01570 (LZV00_01565) kdsB 320550..321314 (+) 765 WP_185818831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LZV00_RS01575 (LZV00_01570) - 321314..321778 (+) 465 WP_166591301.1 low molecular weight protein-tyrosine-phosphatase -
  LZV00_RS01580 (LZV00_01575) murB 321775..322794 (+) 1020 WP_166591302.1 UDP-N-acetylmuramate dehydrogenase -
  LZV00_RS01585 (LZV00_01580) - 323033..323503 (+) 471 WP_166591303.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22957.11 Da        Isoelectric Point: 6.8770

>NTDB_id=641443 LZV00_RS01550 WP_162530197.1 318274..318909(+) (exbB) [Pseudomonas kielensis strain 5BT]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=641443 LZV00_RS01550 WP_162530197.1 318274..318909(+) (exbB) [Pseudomonas kielensis strain 5BT]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCGATCGCTGCATTGGGCATTGTTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAGGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCTGCCGCCCGGGTCATTCATGAGCTGGAGCGCTATAT
CAATGCACTCGGCACCATAGCTGCCATGGCGCCATTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTTATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCC
GCAGGCCTGATGGTGGGGATTCCGTCGGTATTCTTCCACCGGTTCCTGCAGCGCCGCATCGATGAACTGGTGGTTGGCAT
GGAGCAGGAGGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTTGACCTGACCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1GH78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863