Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LZV00_RS01545 Genome accession   NZ_CP090311
Coordinates   315928..318168 (+) Length   746 a.a.
NCBI ID   WP_166591297.1    Uniprot ID   A0A7X1GHA3
Organism   Pseudomonas kielensis strain 5BT     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310928..323168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZV00_RS01520 (LZV00_01515) - 312052..312711 (+) 660 WP_166591293.1 transglutaminase family protein -
  LZV00_RS01525 (LZV00_01520) - 312755..313378 (+) 624 WP_166591294.1 glutathione S-transferase family protein -
  LZV00_RS01530 (LZV00_01525) - 313512..314444 (+) 933 WP_166591295.1 ABC transporter ATP-binding protein -
  LZV00_RS01535 (LZV00_01530) - 314441..315220 (+) 780 WP_166591296.1 ABC transporter permease -
  LZV00_RS01540 (LZV00_01535) - 315271..315792 (-) 522 WP_095167612.1 DUF2062 domain-containing protein -
  LZV00_RS01545 (LZV00_01540) comA 315928..318168 (+) 2241 WP_166591297.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LZV00_RS01550 (LZV00_01545) exbB 318274..318909 (+) 636 WP_162530197.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LZV00_RS01555 (LZV00_01550) - 318906..319334 (+) 429 WP_166591298.1 biopolymer transporter ExbD -
  LZV00_RS01560 (LZV00_01555) lpxK 319334..320344 (+) 1011 WP_166591299.1 tetraacyldisaccharide 4'-kinase -
  LZV00_RS01565 (LZV00_01560) - 320368..320553 (+) 186 WP_095167619.1 Trm112 family protein -
  LZV00_RS01570 (LZV00_01565) kdsB 320550..321314 (+) 765 WP_185818831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LZV00_RS01575 (LZV00_01570) - 321314..321778 (+) 465 WP_166591301.1 low molecular weight protein-tyrosine-phosphatase -
  LZV00_RS01580 (LZV00_01575) murB 321775..322794 (+) 1020 WP_166591302.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 81796.13 Da        Isoelectric Point: 10.5628

>NTDB_id=641442 LZV00_RS01545 WP_166591297.1 315928..318168(+) (comA) [Pseudomonas kielensis strain 5BT]
MRTGMLALALGLLTLVFLPALPPVGMLLAMVLLALMLLPFRTYPLAFFLLGLVWACISAQWALDDRLAPELDGQTRWIEG
RVVGLPQYSPGVVRFELADARARRTEVPTLLRLAWYDGPRVNSGERWRLAVTLKRPVGLLNPHAFDYEAWLLAQRIGATA
TVKDGHRLQSAQWAWRDAVRQRLLAVDAQGREGALAALVLGDSSGLSRADWQVLQDTGTVHLLVISGQHVGLLAGMVYLL
VAGLARYGLWPQRLAWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPWLLALNAVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIALGLGPVLLILNLPISLTGPLVNLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLLDGLFSALSWVAGKLPAWVAPAVPLWAWAIAVLGAVLLLLPKGVPLRPLGWPMLLLLV
FAPPRVVPEGRAEVWQLDVGQGLAIVVRTRQHTLLYDTGPGFRGFDLGAQVVLPALRKFGVRHLDLMLISHAHADHAGGA
RSIWRGLPVRQVISGEPQDLPNELRALPCASGKQWEWDGVRFTLWHWSGATDSNQNSCVLQIEANGERLLLTGDIDARAE
RVLLDSPLAVSSHWLQAPHHGSRSSSSEAFVRALAPQGVLISRGHGNSFGHPHPQVVERYQRLGVQIYDSAEHGAVRLLL
GEFTAPQAMRRAARFWRSAPSVSPAP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=641442 LZV00_RS01545 WP_166591297.1 315928..318168(+) (comA) [Pseudomonas kielensis strain 5BT]
ATGCGCACAGGGATGTTGGCGCTCGCGCTGGGTCTGTTGACCCTGGTTTTTTTGCCGGCCTTACCACCGGTCGGGATGTT
GCTGGCGATGGTGTTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTATCCGCTGGCGTTTTTTCTGTTGGGCCTGGTGT
GGGCCTGTATCAGTGCGCAGTGGGCACTCGATGACCGTCTGGCGCCGGAGCTCGACGGCCAGACTCGCTGGATTGAAGGC
CGGGTCGTCGGCTTGCCCCAATACTCGCCAGGGGTAGTGCGTTTTGAATTGGCCGATGCCCGGGCGCGGCGTACCGAGGT
GCCGACGTTGCTCCGGCTGGCCTGGTATGACGGGCCACGGGTCAACAGCGGCGAACGCTGGCGGCTGGCCGTGACGCTCA
AGCGGCCAGTGGGCCTGCTCAACCCCCATGCTTTTGATTACGAGGCCTGGCTGTTGGCGCAACGCATCGGTGCCACGGCC
ACCGTCAAGGACGGACACCGTCTGCAGTCTGCGCAATGGGCCTGGCGCGACGCGGTTCGCCAGCGCTTGCTGGCCGTCGA
CGCCCAAGGCCGGGAGGGGGCGCTGGCGGCGTTGGTGCTGGGCGACAGCTCTGGGTTGAGCCGTGCCGACTGGCAGGTCT
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATATCCGGACAGCACGTGGGTTTGCTGGCGGGGATGGTCTATCTGCTG
GTTGCGGGCCTCGCGCGGTATGGCCTGTGGCCGCAGCGCCTGGCGTGGTTGCCCTGGGCCTGTGGCCTGGCGTTCGCCGC
AGCGCTGGGCTATGGGCTGCTGGCCGGATTCGAGGTGCCCGTGCGCAGGGCCTGCGTGATGATCGGCCTGGTGTTGTTAT
GGCGCCTGCGCTTTCGCCATCTGGGGGCCTGGTGGCCCTGGCTGCTGGCGCTGAATGCGGTGCTGCTGCTGGACCCATTG
GCCAGTCTGCGCCCGGGGTTCTGGCTGTCGTTTGCCGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGACTGGGGCC
GTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGATTGCGCTTGGCTTAGGTCCGGTGCTGTTGATCCTCAACC
TGCCCATCAGCCTCACCGGTCCCTTGGTCAATCTGCTGGCCGTGCCCTGGATCAGCCTGCTGGTCCTGCCACCCGCCTTG
CTGGGGACGTTGTTGCTGCCGGTGCCCTATGTCGGGGAGGGGCTGTTGTGGCTGGCTGGCGGCTTGCTCGATGGGTTGTT
CAGTGCACTGAGCTGGGTGGCAGGGAAACTGCCGGCCTGGGTGGCGCCAGCAGTGCCTTTGTGGGCCTGGGCGATCGCTG
TGCTGGGCGCGGTATTGCTGTTGCTGCCCAAGGGGGTGCCGTTGCGGCCACTTGGTTGGCCGATGTTGCTGCTGCTGGTG
TTCGCGCCGCCCCGGGTGGTGCCCGAGGGCCGGGCCGAAGTCTGGCAGCTGGATGTCGGCCAGGGCCTGGCGATTGTGGT
GCGTACCCGGCAACACACCTTGCTCTATGACACGGGGCCGGGTTTTCGCGGGTTTGACCTCGGCGCGCAAGTGGTCCTGC
CGGCGTTGCGCAAGTTCGGTGTCCGCCACCTGGACCTGATGTTGATCAGTCACGCCCATGCCGATCATGCCGGGGGCGCA
CGCTCAATCTGGCGTGGCCTGCCGGTCAGGCAAGTCATCAGCGGCGAACCGCAGGATCTGCCGAATGAATTGCGTGCGTT
GCCCTGTGCCAGTGGCAAGCAGTGGGAGTGGGACGGTGTGCGTTTTACCCTGTGGCATTGGTCTGGGGCGACTGACAGCA
ATCAGAATTCCTGCGTGTTGCAGATTGAGGCCAACGGTGAGCGCTTGCTGCTGACCGGCGATATTGACGCCCGTGCCGAG
CGGGTGTTGCTCGATTCGCCGCTGGCGGTCAGCAGCCATTGGCTGCAAGCGCCGCACCACGGTAGCCGCAGCTCCTCGTC
CGAGGCGTTTGTCCGTGCGCTGGCGCCCCAGGGGGTGCTGATTTCCCGGGGGCACGGCAACAGCTTCGGTCATCCCCATC
CCCAGGTGGTCGAGCGCTATCAACGCCTGGGTGTGCAGATCTATGACAGTGCCGAGCACGGCGCGGTGCGCCTGCTTCTG
GGGGAGTTCACGGCGCCGCAGGCGATGCGTCGCGCCGCGCGTTTCTGGCGCAGTGCGCCGTCTGTCAGCCCTGCGCCCTG
A

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1GHA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.448

96.381

0.602