Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LXM48_RS07795 Genome accession   NZ_CP090180
Coordinates   1587228..1587629 (-) Length   133 a.a.
NCBI ID   WP_234305022.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582228..1592629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS07765 (LXM48_07765) tadA 1582484..1582984 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  LXM48_RS07770 (LXM48_07770) - 1582990..1584111 (-) 1122 WP_234305020.1 enoyl-CoA hydratase/isomerase family protein -
  LXM48_RS07775 (LXM48_07775) ung 1584108..1584821 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  LXM48_RS07780 (LXM48_07780) - 1584863..1585459 (-) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  LXM48_RS07785 (LXM48_07785) gspK 1585582..1586532 (-) 951 WP_234305021.1 type II secretion system minor pseudopilin GspK -
  LXM48_RS07790 (LXM48_07790) xcpW 1586611..1587231 (-) 621 WP_005401158.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LXM48_RS07795 (LXM48_07795) xcpV 1587228..1587629 (-) 402 WP_234305022.1 type II secretion system minor pseudopilin GspI Machinery gene
  LXM48_RS07800 (LXM48_07800) - 1587664..1588233 (-) 570 WP_234305023.1 type II secretion system protein -
  LXM48_RS07805 (LXM48_07805) - 1588246..1588860 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  LXM48_RS07810 (LXM48_07810) - 1588906..1589679 (-) 774 WP_234305024.1 TatD family hydrolase -
  LXM48_RS07815 (LXM48_07815) - 1589706..1590047 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  LXM48_RS07820 (LXM48_07820) - 1590062..1591045 (-) 984 WP_234305025.1 AAA family ATPase -
  LXM48_RS07825 (LXM48_07825) kdsB 1591065..1591826 (-) 762 WP_234305026.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14703.76 Da        Isoelectric Point: 9.5634

>NTDB_id=641018 LXM48_RS07795 WP_234305022.1 1587228..1587629(-) (xcpV) [Acinetobacter johnsonii strain DJ-Red]
MKYYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTGHAILRTKSQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=641018 LXM48_RS07795 WP_234305022.1 1587228..1587629(-) (xcpV) [Acinetobacter johnsonii strain DJ-Red]
ATGAAATATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTAGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACTGGACATGCGATTTTACGTACTAAGTCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATCAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

74.359

87.97

0.654