Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LXM48_RS00895 Genome accession   NZ_CP090180
Coordinates   183571..184218 (-) Length   215 a.a.
NCBI ID   WP_234304451.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178571..189218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS00860 (LXM48_00860) mlaE 178914..179693 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LXM48_RS00865 (LXM48_00865) - 179693..180367 (+) 675 WP_234304448.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LXM48_RS00870 (LXM48_00870) - 180388..181023 (+) 636 WP_004691364.1 ABC transporter substrate-binding protein -
  LXM48_RS00875 (LXM48_00875) - 181035..181322 (+) 288 WP_004691363.1 STAS domain-containing protein -
  LXM48_RS00880 (LXM48_00880) - 181404..182417 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  LXM48_RS00885 (LXM48_00885) - 182570..183169 (+) 600 WP_234304449.1 TIGR00730 family Rossman fold protein -
  LXM48_RS00890 (LXM48_00890) - 183166..183570 (+) 405 WP_234304450.1 NUDIX domain-containing protein -
  LXM48_RS00895 (LXM48_00895) comF 183571..184218 (-) 648 WP_234304451.1 phosphoribosyltransferase family protein Machinery gene
  LXM48_RS00900 (LXM48_00900) recG 184205..186250 (-) 2046 WP_234304452.1 ATP-dependent DNA helicase RecG -
  LXM48_RS00905 (LXM48_00905) - 186284..187099 (+) 816 WP_234304453.1 NAD-dependent epimerase/dehydratase family protein -
  LXM48_RS00910 (LXM48_00910) - 187280..187987 (-) 708 WP_234304454.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24890.14 Da        Isoelectric Point: 8.9570

>NTDB_id=641007 LXM48_RS00895 WP_234304451.1 183571..184218(-) (comF) [Acinetobacter johnsonii strain DJ-Red]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYVKLYRRVLILDDVVTTGSSLQVLTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=641007 LXM48_RS00895 WP_234304451.1 183571..184218(-) (comF) [Acinetobacter johnsonii strain DJ-Red]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTACTACACAAAGCACAGCCTTGTCAGTTGTGCGGCATTGT
ACGCGCAGATCTGCATTCAGTCTGTCTGGACTGCTGGCAACAACTCCCACTACACCCTCAGACCATTGAGAAACAAGAGC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAACCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCTATGCCGATTTCGAC
CCAACGGTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTAAATGTTCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGTAAAACTCTACCGGCGTGTTTTGATTTTGGATGATGTTGTGACCACAGG
CAGCTCCCTTCAGGTACTGACTTTACAACTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.216

90.233

0.516
  comF Acinetobacter baumannii D1279779

57.216

90.233

0.516