Detailed information NTG0641007

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM48_RS19675
• Genome accession: NZ_CP107134
• Coordinates: 3933046..3934038 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3928046..3939038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM48_RS19655 (OGM48_19635)	ygbM	3928684..3929460 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM48_RS19660 (OGM48_19640)	ygbN	3929549..3930913 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM48_RS19665 (OGM48_19645)	-	3931056..3932099 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM48_RS19670 (OGM48_19650)	-	3932324..3932875 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM48_RS19675 (OGM48_19655)	rpoS	3933046..3934038 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM48_RS19680 (OGM48_19660)	nlpD	3934101..3935195 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM48_RS19685 (OGM48_19665)	pcm	3935380..3936006 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM48_RS19690 (OGM48_19670)	surE	3936000..3936761 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM48_RS19695 (OGM48_19675)	truD	3936742..3937791 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM48_RS19700 (OGM48_19680)	ispF	3937788..3938267 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM48_RS19705 (OGM48_19685)	ispD	3938267..3938977 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641007 OGM48_RS19675 WP_000081550.1 3933046..3934038(-) (rpoS) [Escherichia coli strain S6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641007 OGM48_RS19675 WP_000081550.1 3933046..3934038(-) (rpoS) [Escherichia coli strain S6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715