Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LXM48_RS00620 Genome accession   NZ_CP090180
Coordinates   129245..129718 (+) Length   157 a.a.
NCBI ID   WP_151835979.1    Uniprot ID   A0AA43BMJ3
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124245..134718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS00610 (LXM48_00610) - 125012..125773 (+) 762 WP_234304429.1 PilX N-terminal domain-containing pilus assembly protein -
  LXM48_RS00615 (LXM48_00615) - 125789..129232 (+) 3444 WP_234304430.1 PilC/PilY family type IV pilus protein -
  LXM48_RS00620 (LXM48_00620) comE 129245..129718 (+) 474 WP_151835979.1 type IV pilin protein Machinery gene
  LXM48_RS00625 (LXM48_00625) - 129719..130195 (+) 477 WP_151835980.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LXM48_RS00630 (LXM48_00630) rpsP 130340..130597 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  LXM48_RS00635 (LXM48_00635) rimM 130626..131174 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  LXM48_RS00640 (LXM48_00640) trmD 131202..131942 (+) 741 WP_094148539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LXM48_RS00645 (LXM48_00645) rplS 132083..132457 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  LXM48_RS00650 (LXM48_00650) - 132517..133488 (-) 972 WP_004978033.1 triacylglycerol lipase -
  LXM48_RS00655 (LXM48_00655) - 133662..134627 (-) 966 WP_234304431.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17461.63 Da        Isoelectric Point: 8.9662

>NTDB_id=641006 LXM48_RS00620 WP_151835979.1 129245..129718(+) (comE) [Acinetobacter johnsonii strain DJ-Red]
MKTENRSLEQGFTLIELMIVVVIVAIFAAIAIPSYQTYIRRAQASQAQQEVQRLASELARWKSRNFSYQGFNLTAKTVPN
YNFEIKDGTDTNLTLNEQDANQQYKAAGQSWVIKAISSNENNFSLLMTSTGVQCKNKTKANITYTSCGSAANGSEGW

Nucleotide


Download         Length: 474 bp        

>NTDB_id=641006 LXM48_RS00620 WP_151835979.1 129245..129718(+) (comE) [Acinetobacter johnsonii strain DJ-Red]
ATGAAAACAGAGAATAGATCACTGGAACAAGGTTTTACTCTCATTGAGCTTATGATTGTTGTGGTGATTGTGGCTATTTT
TGCTGCAATCGCGATCCCAAGTTATCAAACATATATTCGTCGTGCTCAAGCTTCGCAAGCGCAGCAGGAGGTTCAACGTT
TGGCCAGTGAATTGGCTCGATGGAAATCTCGTAATTTTAGTTATCAAGGGTTTAACTTAACAGCGAAAACCGTGCCCAAC
TATAATTTCGAGATTAAAGATGGCACAGATACAAATCTGACTTTAAATGAGCAGGATGCCAATCAGCAATACAAAGCTGC
AGGTCAGAGTTGGGTAATTAAGGCAATTAGTAGCAATGAGAATAATTTTTCATTATTAATGACCAGTACTGGTGTACAGT
GCAAAAATAAAACCAAAGCTAATATTACTTATACAAGTTGTGGTAGTGCTGCGAATGGTAGTGAGGGGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(33-148)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

50

100

0.535
  pilY2 Acinetobacter baumannii D1279779

40.645

98.726

0.401