Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LXG94_RS23865 Genome accession   NZ_CP090179
Coordinates   2913538..2914131 (+) Length   197 a.a.
NCBI ID   WP_005451500.1    Uniprot ID   A0A9X3S2A2
Organism   Vibrio harveyi strain XH2145     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908538..2919131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS23850 (LXG94_23850) - 2909221..2911791 (-) 2571 WP_038898115.1 penicillin-binding protein 1A -
  LXG94_RS23855 (LXG94_23855) pilM 2911970..2912986 (+) 1017 WP_029789968.1 type IV pilus assembly protein PilM Machinery gene
  LXG94_RS23860 (LXG94_23860) pilN 2912970..2913545 (+) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  LXG94_RS23865 (LXG94_23865) pilO 2913538..2914131 (+) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXG94_RS23870 (LXG94_23870) pilP 2914121..2914636 (+) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  LXG94_RS23875 (LXG94_23875) pilQ 2914671..2916422 (+) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  LXG94_RS23880 (LXG94_23880) aroK 2916612..2917130 (+) 519 WP_005451507.1 shikimate kinase AroK -
  LXG94_RS23885 (LXG94_23885) aroB 2917162..2918262 (+) 1101 WP_038898114.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23020.58 Da        Isoelectric Point: 4.8068

>NTDB_id=640982 LXG94_RS23865 WP_005451500.1 2913538..2914131(+) (pilO) [Vibrio harveyi strain XH2145]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=640982 LXG94_RS23865 WP_005451500.1 2913538..2914131(+) (pilO) [Vibrio harveyi strain XH2145]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGCCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

71.066

100

0.711