Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LXE94_RS12215 Genome accession   NZ_CP090125
Coordinates   2297650..2299380 (-) Length   576 a.a.
NCBI ID   WP_257986062.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2292650..2304380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS12190 (LXE94_12165) yqiH 2292739..2293032 (-) 294 WP_003230284.1 lipoprotein -
  LXE94_RS12195 (LXE94_12170) - 2293340..2293492 (+) 153 WP_014480226.1 hypothetical protein -
  LXE94_RS12200 (LXE94_12175) yqiG 2293565..2294683 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  LXE94_RS12205 (LXE94_12180) spo0A 2295116..2295919 (-) 804 WP_257986060.1 sporulation transcription factor Spo0A Regulator
  LXE94_RS12210 (LXE94_12185) spoIVB 2296195..2297475 (-) 1281 WP_257986061.1 SpoIVB peptidase -
  LXE94_RS12215 (LXE94_12190) recN 2297650..2299380 (-) 1731 WP_257986062.1 DNA repair protein RecN Machinery gene
  LXE94_RS12220 (LXE94_12195) argR 2299417..2299866 (-) 450 WP_003230265.1 arginine repressor ArgR -
  LXE94_RS12225 (LXE94_12200) yqxC 2299964..2300809 (-) 846 WP_257986063.1 TlyA family RNA methyltransferase -
  LXE94_RS12230 (LXE94_12205) dxs 2300806..2302707 (-) 1902 WP_095843831.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LXE94_RS12235 (LXE94_12210) ispA 2302882..2303772 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  LXE94_RS12240 (LXE94_12215) xseB 2303762..2304016 (-) 255 WP_257986064.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64507.41 Da        Isoelectric Point: 4.7717

>NTDB_id=640697 LXE94_RS12215 WP_257986062.1 2297650..2299380(-) (recN) [Bacillus subtilis strain Bs96]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQEISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQAVQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=640697 LXE94_RS12215 WP_257986062.1 2297650..2299380(-) (recN) [Bacillus subtilis strain Bs96]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGGAAATTTCAAACTTTGAGAAGATATATGAATCCCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTT
AGAACAGCGTCACGCAATGAAGAGGCTCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACTGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCAGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCGGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTTA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCTGTTCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993