Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LXE94_RS12205 Genome accession   NZ_CP090125
Coordinates   2295116..2295919 (-) Length   267 a.a.
NCBI ID   WP_257986060.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290116..2300919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS12180 (LXE94_12155) glpQB 2291294..2292025 (-) 732 WP_257986059.1 glycerophosphodiester phosphodiesterase -
  LXE94_RS12185 (LXE94_12160) yqiI 2292104..2292724 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  LXE94_RS12190 (LXE94_12165) yqiH 2292739..2293032 (-) 294 WP_003230284.1 lipoprotein -
  LXE94_RS12195 (LXE94_12170) - 2293340..2293492 (+) 153 WP_014480226.1 hypothetical protein -
  LXE94_RS12200 (LXE94_12175) yqiG 2293565..2294683 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  LXE94_RS12205 (LXE94_12180) spo0A 2295116..2295919 (-) 804 WP_257986060.1 sporulation transcription factor Spo0A Regulator
  LXE94_RS12210 (LXE94_12185) spoIVB 2296195..2297475 (-) 1281 WP_257986061.1 SpoIVB peptidase -
  LXE94_RS12215 (LXE94_12190) recN 2297650..2299380 (-) 1731 WP_257986062.1 DNA repair protein RecN Machinery gene
  LXE94_RS12220 (LXE94_12195) argR 2299417..2299866 (-) 450 WP_003230265.1 arginine repressor ArgR -
  LXE94_RS12225 (LXE94_12200) yqxC 2299964..2300809 (-) 846 WP_257986063.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29670.13 Da        Isoelectric Point: 6.1643

>NTDB_id=640696 LXE94_RS12205 WP_257986060.1 2295116..2295919(-) (spo0A) [Bacillus subtilis strain Bs96]
MEKIKVCVADDNRELVNLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGDLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=640696 LXE94_RS12205 WP_257986060.1 2295116..2295919(-) (spo0A) [Bacillus subtilis strain Bs96]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAACCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCGATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.251

100

0.993