Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LXE94_RS02145 Genome accession   NZ_CP090125
Coordinates   400307..400756 (-) Length   149 a.a.
NCBI ID   WP_124060108.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 395307..405756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS02105 (LXE94_02100) - 395627..395824 (+) 198 WP_120363256.1 hypothetical protein -
  LXE94_RS02110 (LXE94_02105) yckC 395844..396299 (+) 456 WP_137200561.1 RDD family protein -
  LXE94_RS02115 (LXE94_02110) yckD 396381..396713 (+) 333 WP_003246247.1 YckD family protein -
  LXE94_RS02120 (LXE94_02115) - 396841..397263 (+) 423 WP_257986681.1 MarR family winged helix-turn-helix transcriptional regulator -
  LXE94_RS02125 (LXE94_02120) - 397251..397592 (+) 342 WP_257986415.1 DUF3147 family protein -
  LXE94_RS02130 (LXE94_02125) - 397612..398340 (+) 729 WP_021481826.1 AAA family ATPase -
  LXE94_RS02135 (LXE94_02130) bglC 398412..399845 (+) 1434 WP_129133868.1 6-phospho-beta-glucosidase -
  LXE94_RS02140 (LXE94_02135) nin/comJ 399882..400280 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  LXE94_RS02145 (LXE94_02140) nucA/comI 400307..400756 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  LXE94_RS02150 (LXE94_02145) tlpC 400924..402635 (-) 1712 Protein_380 methyl-accepting chemotaxis protein TlpC -
  LXE94_RS02155 (LXE94_02150) hxlB 402746..403303 (-) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  LXE94_RS02160 (LXE94_02155) hxlA 403309..403941 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  LXE94_RS02165 (LXE94_02160) hxlR 404174..404536 (+) 363 WP_257986416.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16456.39 Da        Isoelectric Point: 4.5282

>NTDB_id=640665 LXE94_RS02145 WP_124060108.1 400307..400756(-) (nucA/comI) [Bacillus subtilis strain Bs96]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETISFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=640665 LXE94_RS02145 WP_124060108.1 400307..400756(-) (nucA/comI) [Bacillus subtilis strain Bs96]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATAATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCTCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98