Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LXE94_RS02140 Genome accession   NZ_CP090125
Coordinates   399882..400280 (-) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 394882..405280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS02105 (LXE94_02100) - 395627..395824 (+) 198 WP_120363256.1 hypothetical protein -
  LXE94_RS02110 (LXE94_02105) yckC 395844..396299 (+) 456 WP_137200561.1 RDD family protein -
  LXE94_RS02115 (LXE94_02110) yckD 396381..396713 (+) 333 WP_003246247.1 YckD family protein -
  LXE94_RS02120 (LXE94_02115) - 396841..397263 (+) 423 WP_257986681.1 MarR family winged helix-turn-helix transcriptional regulator -
  LXE94_RS02125 (LXE94_02120) - 397251..397592 (+) 342 WP_257986415.1 DUF3147 family protein -
  LXE94_RS02130 (LXE94_02125) - 397612..398340 (+) 729 WP_021481826.1 AAA family ATPase -
  LXE94_RS02135 (LXE94_02130) bglC 398412..399845 (+) 1434 WP_129133868.1 6-phospho-beta-glucosidase -
  LXE94_RS02140 (LXE94_02135) nin/comJ 399882..400280 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  LXE94_RS02145 (LXE94_02140) nucA/comI 400307..400756 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  LXE94_RS02150 (LXE94_02145) tlpC 400924..402635 (-) 1712 Protein_380 methyl-accepting chemotaxis protein TlpC -
  LXE94_RS02155 (LXE94_02150) hxlB 402746..403303 (-) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  LXE94_RS02160 (LXE94_02155) hxlA 403309..403941 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  LXE94_RS02165 (LXE94_02160) hxlR 404174..404536 (+) 363 WP_257986416.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=640664 LXE94_RS02140 WP_021481824.1 399882..400280(-) (nin/comJ) [Bacillus subtilis strain Bs96]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=640664 LXE94_RS02140 WP_021481824.1 399882..400280(-) (nin/comJ) [Bacillus subtilis strain Bs96]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTATGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992