Detailed information NTG0640589

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: LW858_RS04425
• Genome accession: NZ_CP090081
• Coordinates: 859574..862174 (+)
• Length: 866 a.a.
• NCBI ID: WP_233936080.1
• Uniprot ID: -
• Organism: Bacillus cereus strain CPT56D-587-MTF
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 854574..867174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LW858_RS04385 (LW858_04385)	-	855036..855299 (+)	264	WP_053565029.1	hypothetical protein	-
LW858_RS04390 (LW858_04390)	prsA	855339..856196 (-)	858	WP_025687955.1	peptidylprolyl isomerase PrsA	-
LW858_RS04395 (LW858_04395)	-	856325..856456 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
LW858_RS04400 (LW858_04400)	-	856557..857414 (+)	858	WP_000364431.1	YitT family protein	-
LW858_RS04405 (LW858_04405)	-	857440..857637 (-)	198	WP_000527407.1	DUF3813 domain-containing protein	-
LW858_RS04410 (LW858_04410)	-	857638..857778 (-)	141	WP_000516816.1	hypothetical protein	-
LW858_RS04415 (LW858_04415)	-	857884..858693 (-)	810	WP_001041232.1	Cof-type HAD-IIB family hydrolase	-
LW858_RS04420 (LW858_04420)	-	859185..859364 (+)	180	WP_000531421.1	YjzC family protein	-
LW858_RS04425 (LW858_04425)	clpC	859574..862174 (+)	2601	WP_233936080.1	ATP-dependent chaperone ClpB	Regulator
LW858_RS04430 (LW858_04430)	-	862213..862395 (-)	183	WP_001211116.1	YjzD family protein	-
LW858_RS04435 (LW858_04435)	-	862552..863286 (+)	735	WP_000028712.1	hydrolase	-
LW858_RS04440 (LW858_04440)	-	863316..864188 (+)	873	WP_002164601.1	NAD(P)-dependent oxidoreductase	-
LW858_RS04445 (LW858_04445)	comZ	864243..864419 (+)	177	WP_001986215.1	ComZ family protein	Regulator
LW858_RS04450 (LW858_04450)	fabH	864808..865740 (+)	933	WP_001100547.1	beta-ketoacyl-ACP synthase III	-
LW858_RS04455 (LW858_04455)	fabF	865772..867010 (+)	1239	WP_233936082.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97410.40 Da
• Isoelectric Point: 5.1970

>NTDB_id=640589 LW858_RS04425 WP_233936080.1 859574..862174(+) (clpC) [Bacillus cereus strain CPT56D-587-MTF]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINRLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=640589 LW858_RS04425 WP_233936080.1 859574..862174(+) (clpC) [Bacillus cereus strain CPT56D-587-MTF]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGTGCTGAAAGTTTAATTAAAAAGAAACCTTCTGTAACGGGGAGCGGTGCAGAA
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAACTTCTTGTAAGAGCAGGAAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCGATTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACGAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATTGATCCTGTAATCGGCCGTGA
TAGTGAAATACGACGTGTAATCCGTATTCTTTCACGTAAAACGAAAAACAATCCTGTTTTAATTGGGGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGGCTAGCACAGCGTATCGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCACTCGTAGCTGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAGAGG
GAGCCATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGCGGTGAACTGCATTGTATCGGGGCGACGACGCTCGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCTGATAAAGCAATTGACCTTGTTGATGAAGCG
TGTGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGGAAAGAAACGGATCGTGGTAGCCAAGAGCGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGCATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTTTGCGTCGTGAATTAGAAGAAGCAGAAGGCAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCCGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCGAAACTCGTGGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTGTC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCCCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGCATTGACATG
TCTGAGTATATGGAAAAACACGCCGTGTCTCGCTTAATTGGTGCACCTCCTGGATATGTAGGATATGAAGAAGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCATATTCCGTTGTTTTATTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCACAGGGCCGTACAGTGGACTTTAAAAATACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGATGGATTAGAAGAAGATGGTTCCATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTGGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGTCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTGGAAGCAGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAGCGTCAAGTGGAAACGAAATTAGCACGAGAATTAATTGCAGGAACAATTACTGATAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAGTTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• AAA lid domain (AAA_lid_9) (345-447)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48	100	0.485
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.268	100	0.426
clpC	Lactococcus lactis subsp. cremoris KW2	47.059	82.448	0.388