Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LXF01_RS04075 Genome accession   NZ_CP090067
Coordinates   833344..837858 (+) Length   1504 a.a.
NCBI ID   WP_233945045.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 828344..842858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS04050 (LXF01_04050) - 828800..829393 (-) 594 WP_233945418.1 hypothetical protein -
  LXF01_RS04055 (LXF01_04055) pilG 829737..830120 (+) 384 WP_078191060.1 twitching motility response regulator PilG Regulator
  LXF01_RS04060 (LXF01_04060) - 830150..830518 (+) 369 WP_078191059.1 response regulator -
  LXF01_RS04065 (LXF01_04065) - 830525..831061 (+) 537 WP_078191058.1 chemotaxis protein CheW -
  LXF01_RS04070 (LXF01_04070) - 831106..833181 (+) 2076 WP_078192256.1 methyl-accepting chemotaxis protein -
  LXF01_RS04075 (LXF01_04075) chpA 833344..837858 (+) 4515 WP_233945045.1 Hpt domain-containing protein Regulator
  LXF01_RS04080 (LXF01_04080) - 837862..838329 (+) 468 WP_233945046.1 hypothetical protein -
  LXF01_RS04085 (LXF01_04085) dapE 838399..839532 (-) 1134 WP_233945047.1 succinyl-diaminopimelate desuccinylase -
  LXF01_RS04090 (LXF01_04090) - 839655..839804 (-) 150 WP_078191053.1 entericidin A/B family lipoprotein -
  LXF01_RS04095 (LXF01_04095) - 839959..840822 (-) 864 WP_233945048.1 DUF1853 family protein -
  LXF01_RS04100 (LXF01_04100) - 840911..841345 (+) 435 WP_233945049.1 YbaN family protein -
  LXF01_RS04105 (LXF01_04105) elsL 841338..841832 (+) 495 WP_180101807.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1504 a.a.        Molecular weight: 167786.78 Da        Isoelectric Point: 4.3531

>NTDB_id=640540 LXF01_RS04075 WP_233945045.1 833344..837858(+) (chpA) [Acinetobacter sp. SH20PTE14]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFEELAGLFTTWLENPQDKDTLTTIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVIAGSVQLTPTVQKFAQTVLNVYQYKLYPRFKNVAELDVDLRPLVLMGQQLQQNISLEPALEELLKL
ADQLKSEDGVTGLELTDVEATAPVEVLENTIDAVVESEPAPEQVDADASLVEETVSIFIEEAEEHLQTIDQFLQSDDSKS
QDYNGLIRALHTLRGSSSMAQIEEIFEASSKVENLFKTLLQDEIVSSSKETALLIQYAEFVRDYLHVLRSGDKANLASIY
ETFKAAWDDYGFASQDQLAPEDNPQGLVSKLIELNIDQLLDAEFEFDKRALAEFPDYIQQLSQQALELIKHTDNRASVGI
HDFTTQLRAAYQSLVEKPELLHADYGYELFAQAHQEFIHLFDTLAAGQRVVLSEEVQRFLNELTAFVQQDIEAVAATTTP
EAHVVAEPVATVEDKAAVANTTAVDFAQLSQRIQLDHQQMQAADANNDFDEDLLGIFIEEAEELLVGIDQDLSTWTRDQT
NTSALNNLMRYLHTLKGGANMIAASHVGLISHELESIYERIIRQQISITPALIQIIRLVQDDISDRIQTIRDQGIDYPAN
NVIDILKNIQSIVAGERSEAVALASAPISAETEQTAVEPDVSVSEPMDVAEDTAEAVVEAQTTAHTESAVEHLEHAVAEH
VEHPDDDLRSVMEETFLEESEEILEQAVQLLNQWTEQRSDRNVLLQLQRAAHSIKGGARMVENEPVAAIAYQLETTFEHF
AVHHFNSNAYDGLLKTTLAWLKEAIFNHDYSNFDSIKLSLESIQYVDVTVQLPNRVAELEQGIVSKGFEFIQGDGVEPPS
MLGEWSEANSSDNSNEMIRISADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMDGELESQIIA
KHGSENSRYADFDPLEMDQYSSINQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQSEIQESLMRTRLVPFDRL
LPRLQRIVRQTSSTLNRPAELIVQNTEGELDRTILERLVTPFEHMLRNAVDHGLEDTADRLALKKPEMGSIVLNISRQGT
DVLVSFSDDGKGIDETKIKDKALKLGLIKADQFLDKQEILQLIFHPGFSTAQSVTQISGRGVGLDVVQSEIKALGGHVSV
ESELGKGTTFTIRVPTTVAVSDALMVKAGDQQYAISLAQIERIVRIAPTALETYFNSKDDVFKIDNTNYKLRYLSEFVGN
QPIPRLNNVGHSLPVLLIKGNSGQTIALLVDQLVGSRSQIVVKPIGQQFTSVAAIAGATILGDGHVCLILDGQNIARQIQ
TTQRVKHSAEQRDLGRQANARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIEALIAEKQG

Nucleotide


Download         Length: 4515 bp        

>NTDB_id=640540 LXF01_RS04075 WP_233945045.1 833344..837858(+) (chpA) [Acinetobacter sp. SH20PTE14]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACAACTACGCTTCCTGAAGATAGTTATCTTGATCAAGATGCAGAAATTTT
AGAGATTTTTGTTGAAGAAATAGAAGAAATCTTTGAAGAGCTGGCGGGTTTATTTACAACTTGGTTGGAAAATCCACAAG
ATAAAGACACTTTAACGACGATTCGTCGTCATTTCCATACCCTGAAAGGTTCAGGTCGTATGGTCGGGGCAAAATCGGCG
GGTGAAACTGCATGGGCAGTTGAAGATACGCTGAACCGTGTCATTGCGGGTTCAGTACAGTTAACGCCCACCGTTCAAAA
GTTTGCACAAACAGTTTTAAATGTTTATCAATATAAGCTCTATCCACGGTTTAAAAATGTTGCCGAATTGGATGTTGACT
TACGTCCATTGGTTTTAATGGGGCAACAATTACAACAAAATATTAGCCTTGAGCCTGCACTCGAAGAATTATTAAAACTG
GCAGATCAATTAAAATCTGAAGATGGTGTCACTGGTTTAGAACTGACTGATGTTGAAGCTACAGCACCTGTAGAAGTGCT
TGAAAACACGATTGATGCGGTTGTTGAATCAGAACCTGCTCCTGAACAAGTGGATGCAGATGCATCACTGGTCGAAGAGA
CAGTGAGCATTTTTATTGAAGAAGCTGAAGAACATCTACAAACGATTGATCAGTTCCTCCAATCAGATGACAGTAAATCA
CAAGACTATAATGGCTTGATTCGCGCGCTACACACCTTACGTGGTAGTTCGTCAATGGCGCAAATCGAAGAGATTTTTGA
AGCCAGTTCAAAAGTTGAAAACTTATTCAAAACCTTATTACAAGACGAAATCGTATCGAGCTCGAAAGAAACTGCGTTAT
TGATTCAATATGCTGAATTTGTTCGTGATTATTTACACGTTCTGCGTTCAGGGGATAAGGCAAATCTTGCATCTATTTAT
GAAACCTTCAAAGCTGCTTGGGATGATTATGGTTTTGCTAGCCAAGATCAATTGGCGCCTGAGGATAATCCGCAAGGTTT
GGTTTCTAAACTAATCGAATTAAATATTGATCAGTTATTAGATGCTGAATTTGAGTTTGATAAACGTGCACTTGCTGAAT
TCCCAGACTATATTCAACAGCTTAGTCAGCAAGCTTTAGAGTTGATTAAACATACGGATAATCGTGCGTCTGTTGGTATT
CATGATTTCACAACTCAACTGCGTGCAGCGTATCAGTCTTTAGTTGAAAAGCCTGAATTGCTCCATGCTGATTATGGCTA
TGAGTTATTTGCGCAAGCACATCAAGAGTTCATTCACTTATTTGACACTTTAGCTGCGGGTCAGCGTGTAGTGTTAAGTG
AAGAGGTTCAGCGTTTCTTAAATGAGCTGACTGCATTTGTTCAACAAGACATTGAAGCAGTTGCAGCGACGACTACACCA
GAAGCTCATGTAGTTGCTGAACCTGTTGCCACAGTAGAAGATAAAGCCGCTGTTGCAAATACAACAGCAGTAGACTTTGC
ACAATTAAGTCAGCGTATTCAACTTGATCATCAACAGATGCAAGCGGCTGATGCGAATAATGACTTTGATGAAGATCTTT
TAGGGATCTTTATTGAAGAGGCAGAAGAATTATTGGTGGGGATTGACCAAGACCTCAGTACTTGGACACGTGATCAGACC
AATACTTCAGCTTTGAATAATTTAATGCGCTATTTGCATACCCTAAAAGGTGGTGCAAATATGATTGCCGCGTCTCATGT
GGGTTTAATTTCGCATGAATTAGAGTCGATTTATGAGCGCATTATTCGTCAGCAAATTTCGATTACGCCTGCGTTAATTC
AAATTATTCGTTTAGTGCAGGATGATATTTCAGATCGTATTCAAACCATTCGTGACCAAGGGATCGACTACCCAGCGAAT
AATGTGATCGATATTCTCAAGAATATTCAGTCAATTGTGGCAGGAGAGCGTTCAGAAGCTGTTGCATTGGCTTCGGCCCC
TATTTCTGCTGAAACTGAACAAACAGCAGTAGAACCAGATGTATCGGTGTCAGAGCCGATGGATGTTGCTGAAGACACTG
CAGAAGCAGTGGTTGAAGCTCAAACGACTGCTCACACTGAGTCTGCTGTTGAACATCTTGAACATGCGGTTGCTGAACAT
GTTGAGCATCCAGATGACGATCTACGTTCTGTCATGGAAGAAACCTTCCTTGAAGAGTCTGAGGAAATTCTTGAACAAGC
CGTTCAATTATTAAATCAATGGACTGAACAACGTAGTGACCGTAACGTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TTAAGGGTGGTGCGCGTATGGTTGAAAATGAACCTGTTGCCGCAATTGCGTATCAACTTGAGACGACGTTTGAGCATTTC
GCGGTTCATCATTTCAACTCAAATGCATATGACGGCTTACTCAAAACGACGTTGGCATGGTTAAAAGAAGCGATCTTCAA
CCACGACTATAGTAATTTTGATAGCATCAAATTGAGCCTAGAATCCATTCAGTATGTGGATGTTACGGTTCAATTACCAA
ACCGTGTTGCAGAATTAGAACAAGGTATTGTTAGCAAAGGCTTTGAATTTATTCAAGGTGATGGTGTTGAACCGCCATCT
ATGTTGGGTGAATGGTCTGAAGCCAATTCTTCTGATAACAGCAATGAGATGATTCGTATCTCGGCTGATCTCGTCGAGAA
GATGATTGACTTATCAGGCGAAAACTCGATTAACCGTTCACGTATTGAGATGGACTTAGGTCAGCTAGGCAATACCTTGA
ATGAAATGGAGTTAGCAATTAAGCGACTTGCTGACCAGTTACGTCGAATGGATGGTGAGCTTGAGTCACAAATTATTGCC
AAACATGGTTCTGAAAATTCACGCTATGCGGATTTCGACCCATTGGAGATGGACCAATATTCATCGATTAACCAATTGTC
AAAATCTCTAGCCGAATCTGCGTCGGATTTGGTTGACTTCAAGAGTACTTTGGCAGAAAAAATCCGTGATGCAGAAGGTT
TGTTATTACAACAATCACGTATTCAGTCAGAAATTCAAGAAAGTCTGATGCGTACCCGTTTGGTGCCATTTGATCGTTTG
TTACCACGTTTACAACGTATTGTGCGTCAAACTTCTTCGACCTTGAACCGTCCTGCAGAATTGATTGTTCAAAATACAGA
AGGTGAATTGGACCGTACGATCTTAGAGCGTTTGGTGACACCATTTGAACATATGCTGCGTAATGCGGTCGACCATGGTT
TAGAAGATACTGCTGACCGTTTGGCTTTGAAAAAGCCAGAAATGGGTAGCATCGTCTTGAACATTAGTCGTCAGGGGACT
GATGTACTGGTGTCTTTCAGTGATGATGGTAAAGGGATTGATGAAACCAAAATTAAAGACAAAGCCTTAAAACTTGGTTT
AATCAAAGCGGATCAGTTCCTCGATAAACAAGAAATCTTGCAATTGATCTTCCATCCAGGTTTCTCAACGGCACAATCGG
TAACGCAAATTTCGGGTCGTGGTGTTGGTCTGGATGTGGTGCAAAGTGAAATTAAAGCCTTGGGTGGTCATGTTTCCGTT
GAGTCTGAGTTAGGTAAAGGGACGACCTTTACCATTCGTGTACCAACCACAGTAGCGGTCAGCGATGCCTTGATGGTGAA
AGCGGGCGATCAGCAATATGCGATTTCATTAGCGCAAATTGAACGTATTGTCCGTATTGCACCTACGGCACTCGAAACTT
ACTTCAATAGTAAGGATGACGTGTTTAAAATTGACAACACCAATTACAAACTACGGTATTTATCAGAGTTTGTGGGTAAT
CAGCCAATTCCACGTTTAAATAATGTCGGCCATTCATTGCCTGTATTGCTAATAAAAGGCAACAGTGGTCAAACCATTGC
TTTATTGGTCGATCAGTTGGTGGGTTCACGTTCTCAAATCGTGGTGAAACCAATTGGTCAACAATTTACCAGTGTGGCCG
CGATTGCAGGTGCCACGATTCTAGGTGATGGTCATGTATGTTTGATTTTGGATGGGCAAAATATTGCACGTCAAATTCAA
ACTACGCAGCGTGTTAAACATTCAGCTGAACAGCGTGATTTGGGCCGTCAAGCCAATGCGCGTCGTTTAGTGATGATTGT
CGATGACTCGGTAACTGTACGTAAAGTGACTTCACGCTTACTTGAACGTCAAGGTTATGACATTGTGACAGCGAAAGATG
GTGTGGATGCAATTGAGCAGCTTGAAAATGTCCGTCCAGACTTGATGCTACTCGATATTGAAATGCCACGTATGGATGGT
TTCGAAGTGACTAACTTAGTCCGTCACCACGACATTCACCGTGACTTGCCAATCATTATGATTACATCGCGTACAGGTGA
AAAACATCGTGAGCGTGCATTTAGCTTAGGTGTGACTCACTATATGGGTAAACCATTCCAAGAAGCTGAATTGCTTGCCA
ATATTGAAGCGTTAATTGCAGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.721

100

0.616