Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LXF01_RS02050 Genome accession   NZ_CP090067
Coordinates   427100..427732 (-) Length   210 a.a.
NCBI ID   WP_180173245.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422100..432732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS02015 (LXF01_02015) mlaE 422382..423161 (+) 780 WP_180077073.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LXF01_RS02020 (LXF01_02020) - 423161..423841 (+) 681 WP_233944965.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LXF01_RS02025 (LXF01_02025) - 423859..424494 (+) 636 WP_233944967.1 ABC transporter substrate-binding protein -
  LXF01_RS02030 (LXF01_02030) - 424507..424794 (+) 288 WP_111885401.1 STAS domain-containing protein -
  LXF01_RS02035 (LXF01_02035) - 424875..425888 (-) 1014 WP_233944968.1 CorA family divalent cation transporter -
  LXF01_RS02040 (LXF01_02040) - 426044..426652 (+) 609 WP_180024338.1 TIGR00730 family Rossman fold protein -
  LXF01_RS02045 (LXF01_02045) - 426649..427056 (+) 408 WP_180173244.1 NUDIX domain-containing protein -
  LXF01_RS02050 (LXF01_02050) comF 427100..427732 (-) 633 WP_180173245.1 phosphoribosyltransferase family protein Machinery gene
  LXF01_RS02055 (LXF01_02055) recG 427872..429917 (-) 2046 WP_233944969.1 ATP-dependent DNA helicase RecG -
  LXF01_RS02060 (LXF01_02060) - 429977..430756 (+) 780 WP_180173247.1 NAD-dependent epimerase/dehydratase family protein -
  LXF01_RS02065 (LXF01_02065) - 430908..431237 (+) 330 WP_233944970.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24474.62 Da        Isoelectric Point: 9.4609

>NTDB_id=640537 LXF01_RS02050 WP_180173245.1 427100..427732(-) (comF) [Acinetobacter sp. SH20PTE14]
MLQSIQHYIQKGMQSVSPCLLCGIDRQQHHSLCTDCWAQLPWFKQMVNRHEHSISCAFHYDFPIDRIIQSYKYEQQLHYQ
NLLAQSLLSMRLARVQAIVPMPISVERLKDRGYNQMLLVAHMMAKQLRIPVWQPVIRQAQHAQKGLSRLERLENIEQQFI
INPTEKRRFRKVLIIDDVVTTGSSIHALSKLLHQLHCTQVYAACIAAAQP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=640537 LXF01_RS02050 WP_180173245.1 427100..427732(-) (comF) [Acinetobacter sp. SH20PTE14]
ATGCTCCAATCTATCCAACACTACATCCAAAAAGGGATGCAGAGCGTTTCCCCTTGCTTGCTCTGTGGTATCGATCGACA
ACAACATCATTCGCTTTGTACCGACTGCTGGGCACAACTGCCTTGGTTTAAACAAATGGTTAATCGCCATGAACACAGCA
TCTCTTGTGCCTTTCACTATGATTTTCCAATAGATCGCATCATCCAAAGCTATAAGTATGAGCAACAATTGCACTATCAA
AATTTACTGGCACAGAGCCTTTTAAGCATGCGCTTAGCTCGAGTTCAGGCCATTGTTCCCATGCCTATTTCAGTTGAACG
CCTCAAGGACCGTGGATACAACCAAATGCTGCTCGTTGCACACATGATGGCAAAGCAATTGCGCATCCCTGTTTGGCAAC
CAGTGATTCGTCAAGCACAGCACGCTCAAAAAGGTTTAAGTCGGCTAGAACGCCTAGAAAATATCGAACAGCAATTTATT
ATCAACCCAACTGAAAAACGCCGTTTCCGTAAAGTCCTCATTATCGATGATGTAGTCACCACAGGGAGTTCAATCCATGC
ATTAAGCAAGCTGTTACATCAGCTACATTGCACGCAGGTATATGCCGCATGCATTGCTGCGGCACAGCCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(123-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.735

93.333

0.576
  comF Acinetobacter baumannii D1279779

61.224

93.333

0.571